miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27130 5' -57.7 NC_005832.1 + 47955 0.71 0.477565
Target:  5'- gGCCACCACGgugaccucGGGCUGaGGGAcGUCGg -3'
miRNA:   3'- gCGGUGGUGCau------CCUGAC-CCUU-CGGU- -5'
27130 5' -57.7 NC_005832.1 + 79952 0.66 0.760867
Target:  5'- aGCC-CgACGU-GGACUGGGAcaGGUgGa -3'
miRNA:   3'- gCGGuGgUGCAuCCUGACCCU--UCGgU- -5'
27130 5' -57.7 NC_005832.1 + 52179 0.66 0.760867
Target:  5'- gGCC-CUcuugACGUAGGGuCUGGGGA-CCAg -3'
miRNA:   3'- gCGGuGG----UGCAUCCU-GACCCUUcGGU- -5'
27130 5' -57.7 NC_005832.1 + 54338 0.67 0.721413
Target:  5'- aCGaCUACCACGcGGcGCUGGG-GGCCu -3'
miRNA:   3'- -GC-GGUGGUGCaUCcUGACCCuUCGGu -5'
27130 5' -57.7 NC_005832.1 + 94171 0.67 0.720408
Target:  5'- cCGUCuucuuguagaacaGCC-CGUGaaagccGGGCUGGGAGGCCc -3'
miRNA:   3'- -GCGG-------------UGGuGCAU------CCUGACCCUUCGGu -5'
27130 5' -57.7 NC_005832.1 + 40840 0.67 0.711328
Target:  5'- aGCCACCcugcCGUAGaGGCccgGGGGcaucuuuacGGCCAg -3'
miRNA:   3'- gCGGUGGu---GCAUC-CUGa--CCCU---------UCGGU- -5'
27130 5' -57.7 NC_005832.1 + 10759 0.67 0.701174
Target:  5'- gGCCGagGCGUAggcgucGGACUGGaAGGCCGa -3'
miRNA:   3'- gCGGUggUGCAU------CCUGACCcUUCGGU- -5'
27130 5' -57.7 NC_005832.1 + 43155 0.67 0.701174
Target:  5'- gGCCACCGuc-AGG-CUGGGAaagGGCCu -3'
miRNA:   3'- gCGGUGGUgcaUCCuGACCCU---UCGGu -5'
27130 5' -57.7 NC_005832.1 + 43279 0.67 0.680696
Target:  5'- gGUgACCcCGUGGGGuuCgugcGGGAGGCCAg -3'
miRNA:   3'- gCGgUGGuGCAUCCU--Ga---CCCUUCGGU- -5'
27130 5' -57.7 NC_005832.1 + 42312 0.68 0.649693
Target:  5'- cCGUgGCCAUGUGuGGGCUGGGGu-CCu -3'
miRNA:   3'- -GCGgUGGUGCAU-CCUGACCCUucGGu -5'
27130 5' -57.7 NC_005832.1 + 52728 0.69 0.58752
Target:  5'- gGCCGCCGCaaAGGuCUGauaGAGGCCAg -3'
miRNA:   3'- gCGGUGGUGcaUCCuGACc--CUUCGGU- -5'
27130 5' -57.7 NC_005832.1 + 23718 0.7 0.530517
Target:  5'- gGCCAuguugcUCugGUAgucuacgacagacauGGACUGGGAGGUCAc -3'
miRNA:   3'- gCGGU------GGugCAU---------------CCUGACCCUUCGGU- -5'
27130 5' -57.7 NC_005832.1 + 16766 0.7 0.5008
Target:  5'- gGCCgcguuccugggguugACCAUGU-GGACUGGGGcGGCCu -3'
miRNA:   3'- gCGG---------------UGGUGCAuCCUGACCCU-UCGGu -5'
27130 5' -57.7 NC_005832.1 + 97184 0.69 0.566981
Target:  5'- uGCCuccgAgCACGUcGuACUGGGAGGCCAg -3'
miRNA:   3'- gCGG----UgGUGCAuCcUGACCCUUCGGU- -5'
27130 5' -57.7 NC_005832.1 + 845 0.69 0.566981
Target:  5'- gCGCCGa---GUGGGACUcgaGGGggGCCc -3'
miRNA:   3'- -GCGGUggugCAUCCUGA---CCCuuCGGu -5'
27130 5' -57.7 NC_005832.1 + 67553 0.7 0.546629
Target:  5'- cCGCCGCCGCGgcccacuCUGGGAaagAGUCAa -3'
miRNA:   3'- -GCGGUGGUGCauccu--GACCCU---UCGGU- -5'
27130 5' -57.7 NC_005832.1 + 20214 0.7 0.506687
Target:  5'- uGCCGCCAUGUccAGGAaaGGGuGGaCCAu -3'
miRNA:   3'- gCGGUGGUGCA--UCCUgaCCCuUC-GGU- -5'
27130 5' -57.7 NC_005832.1 + 31272 0.7 0.506687
Target:  5'- aGCCGCCACGUcggucAGGAC-GGGAgAGUUu -3'
miRNA:   3'- gCGGUGGUGCA-----UCCUGaCCCU-UCGGu -5'
27130 5' -57.7 NC_005832.1 + 7405 0.74 0.308742
Target:  5'- cCGCCGCCGCGUAGGACcuu---GCCAc -3'
miRNA:   3'- -GCGGUGGUGCAUCCUGacccuuCGGU- -5'
27130 5' -57.7 NC_005832.1 + 20098 0.66 0.770462
Target:  5'- cCGCCugCAUGacguccGGGCUGGaGAuGCCc -3'
miRNA:   3'- -GCGGugGUGCau----CCUGACC-CUuCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.