miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27130 5' -57.7 NC_005832.1 + 23718 0.7 0.530517
Target:  5'- gGCCAuguugcUCugGUAgucuacgacagacauGGACUGGGAGGUCAc -3'
miRNA:   3'- gCGGU------GGugCAU---------------CCUGACCCUUCGGU- -5'
27130 5' -57.7 NC_005832.1 + 31272 0.7 0.506687
Target:  5'- aGCCGCCACGUcggucAGGAC-GGGAgAGUUu -3'
miRNA:   3'- gCGGUGGUGCA-----UCCUGaCCCU-UCGGu -5'
27130 5' -57.7 NC_005832.1 + 20214 0.7 0.506687
Target:  5'- uGCCGCCAUGUccAGGAaaGGGuGGaCCAu -3'
miRNA:   3'- gCGGUGGUGCA--UCCUgaCCCuUC-GGU- -5'
27130 5' -57.7 NC_005832.1 + 16766 0.7 0.5008
Target:  5'- gGCCgcguuccugggguugACCAUGU-GGACUGGGGcGGCCu -3'
miRNA:   3'- gCGG---------------UGGUGCAuCCUGACCCU-UCGGu -5'
27130 5' -57.7 NC_005832.1 + 47955 0.71 0.477565
Target:  5'- gGCCACCACGgugaccucGGGCUGaGGGAcGUCGg -3'
miRNA:   3'- gCGGUGGUGCau------CCUGAC-CCUU-CGGU- -5'
27130 5' -57.7 NC_005832.1 + 7405 0.74 0.308742
Target:  5'- cCGCCGCCGCGUAGGACcuu---GCCAc -3'
miRNA:   3'- -GCGGUGGUGCAUCCUGacccuuCGGU- -5'
27130 5' -57.7 NC_005832.1 + 97151 1.08 0.001421
Target:  5'- cCGCCACCACGUAGGACUGGGAAGCCAu -3'
miRNA:   3'- -GCGGUGGUGCAUCCUGACCCUUCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.