Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27130 | 5' | -57.7 | NC_005832.1 | + | 23718 | 0.7 | 0.530517 |
Target: 5'- gGCCAuguugcUCugGUAgucuacgacagacauGGACUGGGAGGUCAc -3' miRNA: 3'- gCGGU------GGugCAU---------------CCUGACCCUUCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 31272 | 0.7 | 0.506687 |
Target: 5'- aGCCGCCACGUcggucAGGAC-GGGAgAGUUu -3' miRNA: 3'- gCGGUGGUGCA-----UCCUGaCCCU-UCGGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 20214 | 0.7 | 0.506687 |
Target: 5'- uGCCGCCAUGUccAGGAaaGGGuGGaCCAu -3' miRNA: 3'- gCGGUGGUGCA--UCCUgaCCCuUC-GGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 16766 | 0.7 | 0.5008 |
Target: 5'- gGCCgcguuccugggguugACCAUGU-GGACUGGGGcGGCCu -3' miRNA: 3'- gCGG---------------UGGUGCAuCCUGACCCU-UCGGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 47955 | 0.71 | 0.477565 |
Target: 5'- gGCCACCACGgugaccucGGGCUGaGGGAcGUCGg -3' miRNA: 3'- gCGGUGGUGCau------CCUGAC-CCUU-CGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 7405 | 0.74 | 0.308742 |
Target: 5'- cCGCCGCCGCGUAGGACcuu---GCCAc -3' miRNA: 3'- -GCGGUGGUGCAUCCUGacccuuCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 97151 | 1.08 | 0.001421 |
Target: 5'- cCGCCACCACGUAGGACUGGGAAGCCAu -3' miRNA: 3'- -GCGGUGGUGCAUCCUGACCCUUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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