miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27131 3' -44.8 NC_005832.1 + 42008 0.67 0.999788
Target:  5'- cGCCGCAgAGuGGUAGGUg---GCGUCg -3'
miRNA:   3'- -CGGUGUgUC-UCAUUCGuaaaUGUAGg -5'
27131 3' -44.8 NC_005832.1 + 26706 0.67 0.999788
Target:  5'- aGUCGCACAG-GUAGGC--UUGgAUCa -3'
miRNA:   3'- -CGGUGUGUCuCAUUCGuaAAUgUAGg -5'
27131 3' -44.8 NC_005832.1 + 23187 0.68 0.999726
Target:  5'- aGCCACGCAGAcuGUGAGag-----AUCCg -3'
miRNA:   3'- -CGGUGUGUCU--CAUUCguaaaugUAGG- -5'
27131 3' -44.8 NC_005832.1 + 103313 0.68 0.999551
Target:  5'- uGCCAUgACAGAGUA--CAUcu-CAUCCa -3'
miRNA:   3'- -CGGUG-UGUCUCAUucGUAaauGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 12784 0.68 0.999288
Target:  5'- cGCCaggGCGuCAGAGUcuauGGuCAUUgggGCGUCCg -3'
miRNA:   3'- -CGG---UGU-GUCUCAu---UC-GUAAa--UGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 20399 0.68 0.999288
Target:  5'- -aCGCugGGGGUGAGUccugGUUUgGCGUCUg -3'
miRNA:   3'- cgGUGugUCUCAUUCG----UAAA-UGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 43379 0.68 0.999288
Target:  5'- cGCCGCACAGGaccc-CGUccACAUCCa -3'
miRNA:   3'- -CGGUGUGUCUcauucGUAaaUGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 71388 0.69 0.999113
Target:  5'- gGCCACGCAGAcaccgccgcggcGUAGGaagaguCGUCCc -3'
miRNA:   3'- -CGGUGUGUCU------------CAUUCguaaauGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 87556 0.69 0.999113
Target:  5'- gGCCAuCACAGAc--GGCAUggUGCcUCCg -3'
miRNA:   3'- -CGGU-GUGUCUcauUCGUAa-AUGuAGG- -5'
27131 3' -44.8 NC_005832.1 + 92079 0.7 0.997574
Target:  5'- aGCCucuCGuCGGAG-GAGCAUUUGCAacucuuuaggauUCCg -3'
miRNA:   3'- -CGGu--GU-GUCUCaUUCGUAAAUGU------------AGG- -5'
27131 3' -44.8 NC_005832.1 + 13774 0.7 0.997574
Target:  5'- gGCCAUcgaguacCAGGGUAGGCAgcacuacgagUACGUCUc -3'
miRNA:   3'- -CGGUGu------GUCUCAUUCGUaa--------AUGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 89816 0.71 0.993282
Target:  5'- gGCCACauggaACAGGGUGAGgGU---CGUCCc -3'
miRNA:   3'- -CGGUG-----UGUCUCAUUCgUAaauGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 33754 0.72 0.986255
Target:  5'- gGCUGCACAGAGUGcGCAgacUGCAa-- -3'
miRNA:   3'- -CGGUGUGUCUCAUuCGUaa-AUGUagg -5'
27131 3' -44.8 NC_005832.1 + 32364 0.72 0.98434
Target:  5'- uGCCu---GGAGUAAGCGUUUucCAUCCc -3'
miRNA:   3'- -CGGugugUCUCAUUCGUAAAu-GUAGG- -5'
27131 3' -44.8 NC_005832.1 + 71850 0.72 0.98434
Target:  5'- cGCUACGCAaAGUGGGCG---ACAUUCa -3'
miRNA:   3'- -CGGUGUGUcUCAUUCGUaaaUGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 87092 0.74 0.968366
Target:  5'- cGCCucCGCcaAGaAGUGAGCGUcuucUUGCAUCCu -3'
miRNA:   3'- -CGGu-GUG--UC-UCAUUCGUA----AAUGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 52706 0.77 0.878383
Target:  5'- cCCcCACAGAGUGAGCGgcgGCggCCg -3'
miRNA:   3'- cGGuGUGUCUCAUUCGUaaaUGuaGG- -5'
27131 3' -44.8 NC_005832.1 + 100501 1.16 0.010332
Target:  5'- gGCCACACAGAGUAAGCAUUUACAUCCc -3'
miRNA:   3'- -CGGUGUGUCUCAUUCGUAAAUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.