miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27132 3' -51.2 NC_005832.1 + 38990 0.66 0.981846
Target:  5'- aGGGuAUG-GGACAGGCUUcggGAGCCc -3'
miRNA:   3'- aCUCcUGCaUCUGUCCGAGua-CUUGG- -5'
27132 3' -51.2 NC_005832.1 + 32410 0.66 0.981846
Target:  5'- cGAGuGuccCGUGgcGACuGGCUCcgGGGCCc -3'
miRNA:   3'- aCUC-Cu--GCAU--CUGuCCGAGuaCUUGG- -5'
27132 3' -51.2 NC_005832.1 + 67183 0.66 0.981846
Target:  5'- cGAGGAgGggGGAUGGGC--GUGGACa -3'
miRNA:   3'- aCUCCUgCa-UCUGUCCGagUACUUGg -5'
27132 3' -51.2 NC_005832.1 + 44582 0.66 0.981846
Target:  5'- gGAGGACGUuGugAGGgaCAUugcgGAAgCg -3'
miRNA:   3'- aCUCCUGCAuCugUCCgaGUA----CUUgG- -5'
27132 3' -51.2 NC_005832.1 + 44270 0.66 0.981846
Target:  5'- aGAGGGCuaccUGGACAGGgUaacuguggaCGUGGACUc -3'
miRNA:   3'- aCUCCUGc---AUCUGUCCgA---------GUACUUGG- -5'
27132 3' -51.2 NC_005832.1 + 11002 0.66 0.979611
Target:  5'- uUGAGGACGUccgccAGcucucCAGGCUCGuUGGucauggggguGCCc -3'
miRNA:   3'- -ACUCCUGCA-----UCu----GUCCGAGU-ACU----------UGG- -5'
27132 3' -51.2 NC_005832.1 + 43193 0.66 0.979611
Target:  5'- uUGAGGGCGcucccGcCAGGCUggCGUGGuCCg -3'
miRNA:   3'- -ACUCCUGCau---CuGUCCGA--GUACUuGG- -5'
27132 3' -51.2 NC_005832.1 + 6680 0.66 0.979611
Target:  5'- cGAGGcCGgguaaggagaUAGACGGGggCAggagGAGCCu -3'
miRNA:   3'- aCUCCuGC----------AUCUGUCCgaGUa---CUUGG- -5'
27132 3' -51.2 NC_005832.1 + 53924 0.66 0.979611
Target:  5'- aGGGGACGUAGGCcuuucccccGGGCgCGaGggUa -3'
miRNA:   3'- aCUCCUGCAUCUG---------UCCGaGUaCuuGg -5'
27132 3' -51.2 NC_005832.1 + 41675 0.66 0.979611
Target:  5'- cGGGGACG-AGGCAGaGUU--UGAGCa -3'
miRNA:   3'- aCUCCUGCaUCUGUC-CGAguACUUGg -5'
27132 3' -51.2 NC_005832.1 + 711 0.66 0.977177
Target:  5'- aUGAGgGGCGUAaagaacacGGCcggGGaGCUCGUGAGCa -3'
miRNA:   3'- -ACUC-CUGCAU--------CUG---UC-CGAGUACUUGg -5'
27132 3' -51.2 NC_005832.1 + 2663 0.66 0.977177
Target:  5'- gGAGGGCcuGUGGACuauGGCga--GGACCc -3'
miRNA:   3'- aCUCCUG--CAUCUGu--CCGaguaCUUGG- -5'
27132 3' -51.2 NC_005832.1 + 54764 0.66 0.977177
Target:  5'- cGGcGGACGUcGACAGGUaCuuUGAGCa -3'
miRNA:   3'- aCU-CCUGCAuCUGUCCGaGu-ACUUGg -5'
27132 3' -51.2 NC_005832.1 + 38695 0.66 0.977177
Target:  5'- gGAGGACGcAGAgAGGgUUgcgGAGCUc -3'
miRNA:   3'- aCUCCUGCaUCUgUCCgAGua-CUUGG- -5'
27132 3' -51.2 NC_005832.1 + 65693 0.66 0.976923
Target:  5'- cGGGGACGUccacggaGGACaaccagAGGCUgA-GGGCCc -3'
miRNA:   3'- aCUCCUGCA-------UCUG------UCCGAgUaCUUGG- -5'
27132 3' -51.2 NC_005832.1 + 81235 0.66 0.976666
Target:  5'- cGAGGACauuuau-GGC-CAUGAACCa -3'
miRNA:   3'- aCUCCUGcaucuguCCGaGUACUUGG- -5'
27132 3' -51.2 NC_005832.1 + 98136 0.66 0.974536
Target:  5'- gUGAGGAcggcCGUAGGCAGGacauaUCAcacccUGuGGCCc -3'
miRNA:   3'- -ACUCCU----GCAUCUGUCCg----AGU-----AC-UUGG- -5'
27132 3' -51.2 NC_005832.1 + 97184 0.66 0.97168
Target:  5'- --uGGACGUcaagaagcucGACAGGCUCcUGGAgCa -3'
miRNA:   3'- acuCCUGCAu---------CUGUCCGAGuACUUgG- -5'
27132 3' -51.2 NC_005832.1 + 49508 0.66 0.97168
Target:  5'- cGAGGAgGUcAGGCGGGa-CAUGGcggcgcacGCCg -3'
miRNA:   3'- aCUCCUgCA-UCUGUCCgaGUACU--------UGG- -5'
27132 3' -51.2 NC_005832.1 + 101881 0.66 0.97168
Target:  5'- uUGAGGGCcgGGAaGGGCU--UGGACCc -3'
miRNA:   3'- -ACUCCUGcaUCUgUCCGAguACUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.