miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27132 3' -51.2 NC_005832.1 + 72720 0.67 0.949605
Target:  5'- -aGGGGCGcGGACGGGC-CGuUGGGCa -3'
miRNA:   3'- acUCCUGCaUCUGUCCGaGU-ACUUGg -5'
27132 3' -51.2 NC_005832.1 + 66177 0.7 0.861912
Target:  5'- uUGGGGugGgagggacagcUAGACAGGUggAUGGACg -3'
miRNA:   3'- -ACUCCugC----------AUCUGUCCGagUACUUGg -5'
27132 3' -51.2 NC_005832.1 + 74217 0.69 0.892137
Target:  5'- cGAGGcUGUcgcucuucaagaGGACGGuGCUCAcGGACCa -3'
miRNA:   3'- aCUCCuGCA------------UCUGUC-CGAGUaCUUGG- -5'
27132 3' -51.2 NC_005832.1 + 67976 0.69 0.905744
Target:  5'- cUGAGGGCucgcAGGCAGuGUgguaCGUGGACCg -3'
miRNA:   3'- -ACUCCUGca--UCUGUC-CGa---GUACUUGG- -5'
27132 3' -51.2 NC_005832.1 + 43244 0.69 0.905744
Target:  5'- cUGuGGAUGUGGACGGGgUCcUGuGCg -3'
miRNA:   3'- -ACuCCUGCAUCUGUCCgAGuACuUGg -5'
27132 3' -51.2 NC_005832.1 + 80353 0.69 0.912156
Target:  5'- -cAGGugGUGGACAGGgUgGgGAagGCCa -3'
miRNA:   3'- acUCCugCAUCUGUCCgAgUaCU--UGG- -5'
27132 3' -51.2 NC_005832.1 + 54375 0.68 0.924186
Target:  5'- gGAGGACagcacgGUGGACAGGgUCG---GCCc -3'
miRNA:   3'- aCUCCUG------CAUCUGUCCgAGUacuUGG- -5'
27132 3' -51.2 NC_005832.1 + 6538 0.68 0.945049
Target:  5'- -aGGGACaggGGGCAGGCggugaCGUGcGCCg -3'
miRNA:   3'- acUCCUGca-UCUGUCCGa----GUACuUGG- -5'
27132 3' -51.2 NC_005832.1 + 92452 0.68 0.945049
Target:  5'- gGAGGugGUGGACgacgAGGacgaCGaGGACCa -3'
miRNA:   3'- aCUCCugCAUCUG----UCCga--GUaCUUGG- -5'
27132 3' -51.2 NC_005832.1 + 75452 0.71 0.845385
Target:  5'- aGAGGAUccuagAGACuAGGUUCA-GGACCg -3'
miRNA:   3'- aCUCCUGca---UCUG-UCCGAGUaCUUGG- -5'
27132 3' -51.2 NC_005832.1 + 4991 0.71 0.836794
Target:  5'- aGGGacucuGACGUGGACAGGgUCcUGGGCa -3'
miRNA:   3'- aCUC-----CUGCAUCUGUCCgAGuACUUGg -5'
27132 3' -51.2 NC_005832.1 + 27862 0.71 0.827995
Target:  5'- gGAGG-CGgccGGGCAGGC-CcUGGACCu -3'
miRNA:   3'- aCUCCuGCa--UCUGUCCGaGuACUUGG- -5'
27132 3' -51.2 NC_005832.1 + 29883 0.78 0.437881
Target:  5'- cUGGGGACGUugaccAGGCAuGGCUUagGGGCCg -3'
miRNA:   3'- -ACUCCUGCA-----UCUGU-CCGAGuaCUUGG- -5'
27132 3' -51.2 NC_005832.1 + 88148 0.78 0.476865
Target:  5'- aGAGGACccUGGcCAGGCUCcUGGACCu -3'
miRNA:   3'- aCUCCUGc-AUCuGUCCGAGuACUUGG- -5'
27132 3' -51.2 NC_005832.1 + 105119 0.75 0.588273
Target:  5'- uUGAGGGCGUAGAgGGuuUCGUGAgguacucgcgagugACCa -3'
miRNA:   3'- -ACUCCUGCAUCUgUCcgAGUACU--------------UGG- -5'
27132 3' -51.2 NC_005832.1 + 6964 0.74 0.685304
Target:  5'- aUGGGGaACGUGGugcaguuuguuacgGCGGGCacggCAUGGACCc -3'
miRNA:   3'- -ACUCC-UGCAUC--------------UGUCCGa---GUACUUGG- -5'
27132 3' -51.2 NC_005832.1 + 79166 0.73 0.755324
Target:  5'- gUGAGGGCcagGGACAGgaagggagucgaggaGCUCAUGGagGCCg -3'
miRNA:   3'- -ACUCCUGca-UCUGUC---------------CGAGUACU--UGG- -5'
27132 3' -51.2 NC_005832.1 + 1668 0.72 0.800442
Target:  5'- cGAGGGUGUAGucgUAGuGCUCGUGAggACCg -3'
miRNA:   3'- aCUCCUGCAUCu--GUC-CGAGUACU--UGG- -5'
27132 3' -51.2 NC_005832.1 + 65283 0.71 0.80981
Target:  5'- gGAGGACGUAGG-GGGCacg-GGACCc -3'
miRNA:   3'- aCUCCUGCAUCUgUCCGaguaCUUGG- -5'
27132 3' -51.2 NC_005832.1 + 93683 0.71 0.80981
Target:  5'- cUGGGGACGaUAGGCAGGuCUCcucugaugGGAUCc -3'
miRNA:   3'- -ACUCCUGC-AUCUGUCC-GAGua------CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.