miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27132	5'	-59.8	NC_005832.1	+	5560	0.66	0.679328
	Target:  5'- cGGGACGGUgCACaGGC----CCUCCGAg -3' miRNA:   3'- -CCCUGCCA-GUGgCCGagcaGGAGGUU- -5'
27132	5'	-59.8	NC_005832.1	+	65416	0.66	0.648893
	Target:  5'- -uGugGGUC-CCGuGCccccuaCGUCCUCCAAa -3' miRNA:   3'- ccCugCCAGuGGC-CGa-----GCAGGAGGUU- -5'
27132	5'	-59.8	NC_005832.1	+	53047	0.67	0.628524
	Target:  5'- -aGAUGGUCGCCGGCagGaUCCUgagggCCAGg -3' miRNA:   3'- ccCUGCCAGUGGCCGagC-AGGA-----GGUU- -5'
27132	5'	-59.8	NC_005832.1	+	5703	0.69	0.508492
	Target:  5'- gGGaGACGGUgACCaGGC-CG-CCUCCGu -3' miRNA:   3'- -CC-CUGCCAgUGG-CCGaGCaGGAGGUu -5'
27132	5'	-59.8	NC_005832.1	+	13706	0.69	0.489317
	Target:  5'- gGGGACGGUCAUUG-CUCuUCUUCCc- -3' miRNA:   3'- -CCCUGCCAGUGGCcGAGcAGGAGGuu -5'
27132	5'	-59.8	NC_005832.1	+	96077	0.7	0.416356
	Target:  5'- uGGGCcGUCACCGGaCUgGUCCUCa-- -3' miRNA:   3'- cCCUGcCAGUGGCC-GAgCAGGAGguu -5'
27132	5'	-59.8	NC_005832.1	+	20978	0.72	0.320377
	Target:  5'- aGGACGccugaACUGGCUCuGUCCUCCAGg -3' miRNA:   3'- cCCUGCcag--UGGCCGAG-CAGGAGGUU- -5'
27132	5'	-59.8	NC_005832.1	+	100583	1.07	0.001216
	Target:  5'- gGGGACGGUCACCGGCUCGUCCUCCAAc -3' miRNA:   3'- -CCCUGCCAGUGGCCGAGCAGGAGGUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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