miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27135 3' -54.2 NC_005832.1 + 25659 0.66 0.912363
Target:  5'- aGAGGUCGGgg--GGACAUGGGgUuCGGg -3'
miRNA:   3'- -CUCUAGCCgguaCCUGUACCUgA-GCU- -5'
27135 3' -54.2 NC_005832.1 + 77417 0.66 0.912363
Target:  5'- --aGUCGGUUccagaguuguaGUGGugGUGGACUCuGAg -3'
miRNA:   3'- cucUAGCCGG-----------UACCugUACCUGAG-CU- -5'
27135 3' -54.2 NC_005832.1 + 42503 0.66 0.899538
Target:  5'- uGAGGagGGCCGccaugcucUGGugGUGGAC-CGu -3'
miRNA:   3'- -CUCUagCCGGU--------ACCugUACCUGaGCu -5'
27135 3' -54.2 NC_005832.1 + 87517 0.66 0.885715
Target:  5'- cAGGcuggCGGCCAUguaccacgacGGGCuccUGGACUCGGc -3'
miRNA:   3'- cUCUa---GCCGGUA----------CCUGu--ACCUGAGCU- -5'
27135 3' -54.2 NC_005832.1 + 42303 0.67 0.878439
Target:  5'- cGAGGgaGGCCGUGGcCAugugUGGGCUgGGg -3'
miRNA:   3'- -CUCUagCCGGUACCuGU----ACCUGAgCU- -5'
27135 3' -54.2 NC_005832.1 + 89633 0.67 0.858431
Target:  5'- gGAG-UCGGCCggggccGUGGugccaggagucacaaAgGUGGACUCGAa -3'
miRNA:   3'- -CUCuAGCCGG------UACC---------------UgUACCUGAGCU- -5'
27135 3' -54.2 NC_005832.1 + 79161 0.67 0.855217
Target:  5'- uGAGGgugagGGCCAgGGACAggaagGGAgUCGAg -3'
miRNA:   3'- -CUCUag---CCGGUaCCUGUa----CCUgAGCU- -5'
27135 3' -54.2 NC_005832.1 + 79889 0.67 0.847033
Target:  5'- aGAGggCGGCCAUGGcCucGGACccuUCGGc -3'
miRNA:   3'- -CUCuaGCCGGUACCuGuaCCUG---AGCU- -5'
27135 3' -54.2 NC_005832.1 + 39445 0.69 0.774709
Target:  5'- gGGGGUCaugcuagacccGCCAggUGGACGUGGACUCc- -3'
miRNA:   3'- -CUCUAGc----------CGGU--ACCUGUACCUGAGcu -5'
27135 3' -54.2 NC_005832.1 + 94695 0.69 0.76495
Target:  5'- uGAGGcUCGuuaaacccGCCGUGGGCAUGGACa--- -3'
miRNA:   3'- -CUCU-AGC--------CGGUACCUGUACCUGagcu -5'
27135 3' -54.2 NC_005832.1 + 15391 0.69 0.755063
Target:  5'- cAGAgCGGCCAUGGAUA-GGGCgUGGg -3'
miRNA:   3'- cUCUaGCCGGUACCUGUaCCUGaGCU- -5'
27135 3' -54.2 NC_005832.1 + 52091 0.71 0.683164
Target:  5'- --uGUCGGCCuUGGAgAUGGACUUu- -3'
miRNA:   3'- cucUAGCCGGuACCUgUACCUGAGcu -5'
27135 3' -54.2 NC_005832.1 + 96496 0.71 0.662061
Target:  5'- cAGGUCaGCCAgGGACcUGGACUCu- -3'
miRNA:   3'- cUCUAGcCGGUaCCUGuACCUGAGcu -5'
27135 3' -54.2 NC_005832.1 + 65865 0.71 0.651466
Target:  5'- cAGGUCGGgCC-UGGACAUGGAuauCUgGAg -3'
miRNA:   3'- cUCUAGCC-GGuACCUGUACCU---GAgCU- -5'
27135 3' -54.2 NC_005832.1 + 36056 0.72 0.577334
Target:  5'- aGGGGUgGGCCggGUGGACGcuccUGGGCUgGAc -3'
miRNA:   3'- -CUCUAgCCGG--UACCUGU----ACCUGAgCU- -5'
27135 3' -54.2 NC_005832.1 + 52703 0.79 0.275828
Target:  5'- gGAGugagGGCCGUGGugGUGGACUUGGg -3'
miRNA:   3'- -CUCuag-CCGGUACCugUACCUGAGCU- -5'
27135 3' -54.2 NC_005832.1 + 103707 1.09 0.002832
Target:  5'- uGAGAUCGGCCAUGGACAUGGACUCGAa -3'
miRNA:   3'- -CUCUAGCCGGUACCUGUACCUGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.