miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27135 5' -49.4 NC_005832.1 + 20511 0.65 0.993764
Target:  5'- --cCGUGGACCcucugggaggacgGUGCCCUUGAUg--- -3'
miRNA:   3'- agaGCAUUUGG-------------UACGGGAACUGgaac -5'
27135 5' -49.4 NC_005832.1 + 101663 0.66 0.992861
Target:  5'- aCUCGUAGAgaugGCCUUUGGCCc-- -3'
miRNA:   3'- aGAGCAUUUgguaCGGGAACUGGaac -5'
27135 5' -49.4 NC_005832.1 + 76043 0.66 0.989078
Target:  5'- cUCUCcuuGGCCAggGCCCUggUGGCCcUGa -3'
miRNA:   3'- -AGAGcauUUGGUa-CGGGA--ACUGGaAC- -5'
27135 5' -49.4 NC_005832.1 + 53252 0.67 0.985794
Target:  5'- gUCUCG-GAACCGgugGCCCUcuUGACg--- -3'
miRNA:   3'- -AGAGCaUUUGGUa--CGGGA--ACUGgaac -5'
27135 5' -49.4 NC_005832.1 + 8935 0.67 0.983891
Target:  5'- uUCUCGaUGAACCAcuuuUCCaUGGCCUUGc -3'
miRNA:   3'- -AGAGC-AUUUGGUac--GGGaACUGGAAC- -5'
27135 5' -49.4 NC_005832.1 + 78781 0.67 0.983891
Target:  5'- aCUCGggGGCUgcagugGUGCCCggggacgUGACCUa- -3'
miRNA:   3'- aGAGCauUUGG------UACGGGa------ACUGGAac -5'
27135 5' -49.4 NC_005832.1 + 97136 0.69 0.953054
Target:  5'- aCUgGgAAGCCAUGUCCcUGAgCUUGg -3'
miRNA:   3'- aGAgCaUUUGGUACGGGaACUgGAAC- -5'
27135 5' -49.4 NC_005832.1 + 75533 0.7 0.938922
Target:  5'- --gUGUGAGCCAcgGCCCccGACUUUGg -3'
miRNA:   3'- agaGCAUUUGGUa-CGGGaaCUGGAAC- -5'
27135 5' -49.4 NC_005832.1 + 27756 0.72 0.873977
Target:  5'- aUCUUGUAGGCCAcaacUGCCCccaGGCCg-- -3'
miRNA:   3'- -AGAGCAUUUGGU----ACGGGaa-CUGGaac -5'
27135 5' -49.4 NC_005832.1 + 46531 0.72 0.873976
Target:  5'- cCUUGUAAGCCAguUGCCuCUUGuCCaUGg -3'
miRNA:   3'- aGAGCAUUUGGU--ACGG-GAACuGGaAC- -5'
27135 5' -49.4 NC_005832.1 + 103672 1.1 0.007349
Target:  5'- aUCUCGUAAACCAUGCCCUUGACCUUGu -3'
miRNA:   3'- -AGAGCAUUUGGUACGGGAACUGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.