miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27136 3' -51 NC_005832.1 + 39882 0.66 0.982389
Target:  5'- aGGgagACGACGgucCCGUCUaCCCAaaGGGAGc -3'
miRNA:   3'- -UCaaaUGUUGC---GGCAGA-GGGU--CCUUC- -5'
27136 3' -51 NC_005832.1 + 94741 0.66 0.981751
Target:  5'- -----cCAGCGUgGUCUggagggacugcaggCCCAGGAGGa -3'
miRNA:   3'- ucaaauGUUGCGgCAGA--------------GGGUCCUUC- -5'
27136 3' -51 NC_005832.1 + 67366 0.66 0.980194
Target:  5'- ----gGCAGCcCCcUCUCCCAGGGc- -3'
miRNA:   3'- ucaaaUGUUGcGGcAGAGGGUCCUuc -5'
27136 3' -51 NC_005832.1 + 43102 0.66 0.980194
Target:  5'- ----aACAugGCCGagggggugggguUCUCCCuGGAGa -3'
miRNA:   3'- ucaaaUGUugCGGC------------AGAGGGuCCUUc -5'
27136 3' -51 NC_005832.1 + 93576 0.66 0.977552
Target:  5'- uGUUUACGgucAgGCCGcCUCCCGugcuagcGGGAGc -3'
miRNA:   3'- uCAAAUGU---UgCGGCaGAGGGU-------CCUUC- -5'
27136 3' -51 NC_005832.1 + 99502 0.66 0.97239
Target:  5'- ----aGCAGCaa-GUCUCCCAGGAu- -3'
miRNA:   3'- ucaaaUGUUGcggCAGAGGGUCCUuc -5'
27136 3' -51 NC_005832.1 + 87644 0.67 0.969353
Target:  5'- cGUggUACAugGCCGcCagCCuGGAGGa -3'
miRNA:   3'- uCAa-AUGUugCGGCaGagGGuCCUUC- -5'
27136 3' -51 NC_005832.1 + 55005 0.67 0.960359
Target:  5'- aGGUagACGugGCCGuUCUCUCAaggugccucaaggguGGAGGa -3'
miRNA:   3'- -UCAaaUGUugCGGC-AGAGGGU---------------CCUUC- -5'
27136 3' -51 NC_005832.1 + 66542 0.68 0.941277
Target:  5'- ----gGCAGCGUCucccaaGUCccaUCCCAGGGAGg -3'
miRNA:   3'- ucaaaUGUUGCGG------CAG---AGGGUCCUUC- -5'
27136 3' -51 NC_005832.1 + 39472 0.68 0.938282
Target:  5'- uGGgcccugguCGCCGUCgucCCCGGGggGg -3'
miRNA:   3'- -UCaaauguu-GCGGCAGa--GGGUCCuuC- -5'
27136 3' -51 NC_005832.1 + 70584 0.68 0.936232
Target:  5'- gAGUUUuguCuccuuCCGUCUCUCAGGGAGg -3'
miRNA:   3'- -UCAAAu--Guugc-GGCAGAGGGUCCUUC- -5'
27136 3' -51 NC_005832.1 + 27699 0.69 0.925338
Target:  5'- ---gUGC-ACaCCG-CUCCCAGGAAGg -3'
miRNA:   3'- ucaaAUGuUGcGGCaGAGGGUCCUUC- -5'
27136 3' -51 NC_005832.1 + 1013 0.7 0.878837
Target:  5'- gGGgcUGCAGCGCCuUCacaCCCAGGGGc -3'
miRNA:   3'- -UCaaAUGUUGCGGcAGa--GGGUCCUUc -5'
27136 3' -51 NC_005832.1 + 52377 0.7 0.87117
Target:  5'- ----gACAGCGUCGcCUCCaGGGGAGg -3'
miRNA:   3'- ucaaaUGUUGCGGCaGAGGgUCCUUC- -5'
27136 3' -51 NC_005832.1 + 44402 0.71 0.811165
Target:  5'- ---aUGCGGaGCCGUCcugaCCCAGGAGGa -3'
miRNA:   3'- ucaaAUGUUgCGGCAGa---GGGUCCUUC- -5'
27136 3' -51 NC_005832.1 + 30733 0.73 0.710907
Target:  5'- cGGUg-ACGGCGCCG-CUCCCAaGAAGa -3'
miRNA:   3'- -UCAaaUGUUGCGGCaGAGGGUcCUUC- -5'
27136 3' -51 NC_005832.1 + 13586 0.75 0.613879
Target:  5'- ----aGCAAUGaCCGUC-CCCGGGAAGa -3'
miRNA:   3'- ucaaaUGUUGC-GGCAGaGGGUCCUUC- -5'
27136 3' -51 NC_005832.1 + 67831 0.76 0.560048
Target:  5'- ---cUGgGACGCCGUUUCCCAGGccGAGu -3'
miRNA:   3'- ucaaAUgUUGCGGCAGAGGGUCC--UUC- -5'
27136 3' -51 NC_005832.1 + 104214 1.1 0.004829
Target:  5'- cAGUUUACAACGCCGUCUCCCAGGAAGg -3'
miRNA:   3'- -UCAAAUGUUGCGGCAGAGGGUCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.