miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27137 5' -62.8 NC_005832.1 + 81265 0.66 0.509565
Target:  5'- gUUCCCAGuCUACGacGGCCCUCCUa--- -3'
miRNA:   3'- gAGGGGUC-GGUGU--CCGGGGGGAgaac -5'
27137 5' -62.8 NC_005832.1 + 91639 0.66 0.5
Target:  5'- gUCCCC-GCCACc-GCCUCCCacacCUUGg -3'
miRNA:   3'- gAGGGGuCGGUGucCGGGGGGa---GAAC- -5'
27137 5' -62.8 NC_005832.1 + 75997 0.66 0.5
Target:  5'- -cCCCCAacGCCaACAGcGCCCUCCUgCUc- -3'
miRNA:   3'- gaGGGGU--CGG-UGUC-CGGGGGGA-GAac -5'
27137 5' -62.8 NC_005832.1 + 66493 0.66 0.5
Target:  5'- -aCCUgAGCUACAGGa-CCCCUCa-- -3'
miRNA:   3'- gaGGGgUCGGUGUCCggGGGGAGaac -5'
27137 5' -62.8 NC_005832.1 + 17251 0.66 0.482051
Target:  5'- -gCCCCGGCCACAGGCCagaacgaagccagggUUCUCc-- -3'
miRNA:   3'- gaGGGGUCGGUGUCCGGg--------------GGGAGaac -5'
27137 5' -62.8 NC_005832.1 + 702 0.66 0.481115
Target:  5'- -aCCUCAcGUaAgGGGCCCCCCUCg-- -3'
miRNA:   3'- gaGGGGU-CGgUgUCCGGGGGGAGaac -5'
27137 5' -62.8 NC_005832.1 + 54872 0.66 0.471804
Target:  5'- -gCCgCCAGgCACAGGCCgguCCUCUCg-- -3'
miRNA:   3'- gaGG-GGUCgGUGUCCGG---GGGGAGaac -5'
27137 5' -62.8 NC_005832.1 + 1773 0.66 0.471804
Target:  5'- -aCCUguGCCugucCAuGGCCaggCCCCUCUUGg -3'
miRNA:   3'- gaGGGguCGGu---GU-CCGG---GGGGAGAAC- -5'
27137 5' -62.8 NC_005832.1 + 67356 0.66 0.462584
Target:  5'- uCUCCCagGGCCugAGGaCCUUCUCUa- -3'
miRNA:   3'- -GAGGGg-UCGGugUCCgGGGGGAGAac -5'
27137 5' -62.8 NC_005832.1 + 52938 0.67 0.450741
Target:  5'- aUCUCUAgGCCGCAGacgguguccgugccGUCgCCCCUCUUGa -3'
miRNA:   3'- gAGGGGU-CGGUGUC--------------CGG-GGGGAGAAC- -5'
27137 5' -62.8 NC_005832.1 + 50990 0.67 0.448032
Target:  5'- gCUCUCCGGuaggacccgguccucCCugAGGCCCCCUugguUCUa- -3'
miRNA:   3'- -GAGGGGUC---------------GGugUCCGGGGGG----AGAac -5'
27137 5' -62.8 NC_005832.1 + 65291 0.67 0.444434
Target:  5'- gCUCCCUGGCCuugucgacUAGGUCCaggaCCUUUUGg -3'
miRNA:   3'- -GAGGGGUCGGu-------GUCCGGGg---GGAGAAC- -5'
27137 5' -62.8 NC_005832.1 + 86309 0.67 0.43551
Target:  5'- gCUCCacaCCAGCCuccuCAGGCggcugCUCCUCUUGc -3'
miRNA:   3'- -GAGG---GGUCGGu---GUCCGg----GGGGAGAAC- -5'
27137 5' -62.8 NC_005832.1 + 52166 0.67 0.426691
Target:  5'- uCUCCUUA-CCACAGGCCCUCUUg--- -3'
miRNA:   3'- -GAGGGGUcGGUGUCCGGGGGGAgaac -5'
27137 5' -62.8 NC_005832.1 + 80048 0.67 0.409375
Target:  5'- -gCUCCuGCgCGCAGGCCCCCaUCg-- -3'
miRNA:   3'- gaGGGGuCG-GUGUCCGGGGGgAGaac -5'
27137 5' -62.8 NC_005832.1 + 43281 0.67 0.408521
Target:  5'- uUUCCCAGCCugAcgguggccagcacGGCCUCCCUg--- -3'
miRNA:   3'- gAGGGGUCGGugU-------------CCGGGGGGAgaac -5'
27137 5' -62.8 NC_005832.1 + 54653 0.67 0.400883
Target:  5'- aUCCUguCGGCCAgGgcGGCgUCCCUCUUGg -3'
miRNA:   3'- gAGGG--GUCGGUgU--CCGgGGGGAGAAC- -5'
27137 5' -62.8 NC_005832.1 + 101184 0.67 0.400883
Target:  5'- -gCCCCAGUCAUcGGCCCacaCCUUg-- -3'
miRNA:   3'- gaGGGGUCGGUGuCCGGGg--GGAGaac -5'
27137 5' -62.8 NC_005832.1 + 54062 0.68 0.391672
Target:  5'- -aCCCCuuggaggugacguGGCCcCAGGCCUCCUUCa-- -3'
miRNA:   3'- gaGGGG-------------UCGGuGUCCGGGGGGAGaac -5'
27137 5' -62.8 NC_005832.1 + 101066 0.68 0.376091
Target:  5'- uUCUCCAGUaugacguaaUACAGGCUCCCCUg--- -3'
miRNA:   3'- gAGGGGUCG---------GUGUCCGGGGGGAgaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.