miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27138 5' -58.6 NC_005832.1 + 2653 0.68 0.631233
Target:  5'- uUGUcgCGgagGAGGGCCuguggacuauGGCGaGGACCCUg -3'
miRNA:   3'- -ACGa-GCa--CUCCUGG----------CCGCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 20524 0.68 0.621018
Target:  5'- -cCUC-UGAGGGCCccCGUGGACCCUc -3'
miRNA:   3'- acGAGcACUCCUGGccGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 54810 0.68 0.600622
Target:  5'- gGC-CGacggGGGGACCGuCcUGGACCCCg -3'
miRNA:   3'- aCGaGCa---CUCCUGGCcGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 54523 0.69 0.560163
Target:  5'- -cCUCGUGGGGcCUGGgGccGACCCUg -3'
miRNA:   3'- acGAGCACUCCuGGCCgCauCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 10947 0.69 0.550157
Target:  5'- gUGCUgG-GAGGcACCGGCau-GACCCa -3'
miRNA:   3'- -ACGAgCaCUCC-UGGCCGcauCUGGGg -5'
27138 5' -58.6 NC_005832.1 + 39250 0.69 0.550157
Target:  5'- aUGUUCG-GcAGGGCaggcaggaaCGGCGUaaagGGGCCCCg -3'
miRNA:   3'- -ACGAGCaC-UCCUG---------GCCGCA----UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 2124 0.69 0.550157
Target:  5'- aUGCUCGUGGugcuGGCCcccauauucGGCG-AGGCCCUg -3'
miRNA:   3'- -ACGAGCACUc---CUGG---------CCGCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 55940 0.69 0.550157
Target:  5'- gGCUCcgaGAGGuacauCUGG-GUGGACCCCu -3'
miRNA:   3'- aCGAGca-CUCCu----GGCCgCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 86488 0.69 0.530317
Target:  5'- aGCcUGUaGAGGagGCUGGUGUGGAUCCUg -3'
miRNA:   3'- aCGaGCA-CUCC--UGGCCGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 13142 0.7 0.520494
Target:  5'- gGCUCGUcaaGACCaggGGCcUGGACCCCa -3'
miRNA:   3'- aCGAGCAcucCUGG---CCGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 45820 0.7 0.520494
Target:  5'- aGCUUGUaGAGGA-CGGCcauguacucUGGACCCCc -3'
miRNA:   3'- aCGAGCA-CUCCUgGCCGc--------AUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 67179 0.71 0.435863
Target:  5'- aGCUCGaggaggGGGGAUgGGCGUGGACa-- -3'
miRNA:   3'- aCGAGCa-----CUCCUGgCCGCAUCUGggg -5'
27138 5' -58.6 NC_005832.1 + 4873 0.71 0.435863
Target:  5'- cGCUCGUGAGG-CUGGU--AGACgCUCa -3'
miRNA:   3'- aCGAGCACUCCuGGCCGcaUCUG-GGG- -5'
27138 5' -58.6 NC_005832.1 + 31218 0.72 0.418143
Target:  5'- cGC-CaUGAGGACC-GCGUAGGCCUUg -3'
miRNA:   3'- aCGaGcACUCCUGGcCGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 1661 0.72 0.384055
Target:  5'- gGCUCaggccaucggcaGUGAGG-CUGGCGgcucccGACCCCa -3'
miRNA:   3'- aCGAG------------CACUCCuGGCCGCau----CUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 43385 0.72 0.375826
Target:  5'- gGUUCGUGAGGAg-GGUGcUGGACCCa -3'
miRNA:   3'- aCGAGCACUCCUggCCGC-AUCUGGGg -5'
27138 5' -58.6 NC_005832.1 + 683 0.73 0.359728
Target:  5'- aGCUCGUGAgcaGGGuguccUCGGaCGcGGACCCCg -3'
miRNA:   3'- aCGAGCACU---CCU-----GGCC-GCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 98563 0.73 0.329001
Target:  5'- cGCUCaUGAgacaagaguacGGGCCGGCGUucacGGCCCUg -3'
miRNA:   3'- aCGAGcACU-----------CCUGGCCGCAu---CUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 48113 0.74 0.321628
Target:  5'- gGCUgGUgagcugGAGGACUGGC-UGGGCCCUg -3'
miRNA:   3'- aCGAgCA------CUCCUGGCCGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 75647 0.74 0.29338
Target:  5'- cGCU--UGAGGGCCgGGUGgAGGCCCCu -3'
miRNA:   3'- aCGAgcACUCCUGG-CCGCaUCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.