Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27139 | 3' | -52.6 | NC_005832.1 | + | 51013 | 0.68 | 0.913931 |
Target: 5'- cCCUGaggCCCCCUUGG-UUcUAGGACa- -3' miRNA: 3'- -GGACa--GGGGGAGCCuGAaAUUCUGcc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 43796 | 0.68 | 0.913931 |
Target: 5'- gCCUGcUUCCCCaugUUGGACUgguAGGCGu -3' miRNA: 3'- -GGAC-AGGGGG---AGCCUGAaauUCUGCc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 19039 | 0.68 | 0.907773 |
Target: 5'- -gUGUCuUCCCUCGGAucCUUUgGAGGCGa -3' miRNA: 3'- ggACAG-GGGGAGCCU--GAAA-UUCUGCc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 49390 | 0.69 | 0.901367 |
Target: 5'- gCCUGaCCUCCUCGGACccuuccuuGGugGu -3' miRNA: 3'- -GGACaGGGGGAGCCUGaaau----UCugCc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 103462 | 0.69 | 0.887821 |
Target: 5'- cCCUGUCCCCa-CGGuCUguuGGAUGa -3' miRNA: 3'- -GGACAGGGGgaGCCuGAaauUCUGCc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 43486 | 0.69 | 0.87107 |
Target: 5'- uCCUcGUCCCCgUCGGACUUUcucccucgcccuccAGGAg-- -3' miRNA: 3'- -GGA-CAGGGGgAGCCUGAAA--------------UUCUgcc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 47675 | 0.69 | 0.865731 |
Target: 5'- gCUgGUCCUCUUCGGcCUUUGGGGCc- -3' miRNA: 3'- gGA-CAGGGGGAGCCuGAAAUUCUGcc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 71315 | 0.7 | 0.857916 |
Target: 5'- cCUUGUCCCauuggacgggCUCGGACggccuGACGGc -3' miRNA: 3'- -GGACAGGGg---------GAGCCUGaaauuCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 67629 | 0.71 | 0.797603 |
Target: 5'- cCCUGggucagggagCUCCCUUGGACcUUGAGaAUGGa -3' miRNA: 3'- -GGACa---------GGGGGAGCCUGaAAUUC-UGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 80844 | 0.73 | 0.698927 |
Target: 5'- -gUGUCCCCCg-GGGCccu-GGACGGg -3' miRNA: 3'- ggACAGGGGGagCCUGaaauUCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 55822 | 0.73 | 0.678163 |
Target: 5'- cCCUGacaaacaCCCCgUCGGACUUUAAcguGugGGc -3' miRNA: 3'- -GGACa------GGGGgAGCCUGAAAUU---CugCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 6731 | 0.79 | 0.379287 |
Target: 5'- -aUGUCCCCCUUGGACUgggcccuggacauGACGGc -3' miRNA: 3'- ggACAGGGGGAGCCUGAaauu---------CUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 2011 | 1.13 | 0.003052 |
Target: 5'- cCCUGUCCCCCUCGGACUUUAAGACGGu -3' miRNA: 3'- -GGACAGGGGGAGCCUGAAAUUCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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