miRNA: 3'- uGCCGaa-UGCCAACGaa---GCCUaCAUC- -5'
miRNA: 3'- -UGCCGAAugCCa---ACGAAg--CCUACAUc -5'
miRNA: 3'- -UGCCGAAUGCCAACGAAGCCUACAUC- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 2714 | 3' | -50.7 | NC_001491.2 | + | 80514 | 0.69 | 0.951793 |
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Target: 5'- cCGGCgcgGCGGUUGCcagcaCGGGaGUAGu -3' miRNA: 3'- uGCCGaa-UGCCAACGaa---GCCUaCAUC- -5' |
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| 2714 | 3' | -50.7 | NC_001491.2 | + | 18146 | 0.75 | 0.74039 |
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Target: 5'- gGCGGUUUugGGgaagUGCUUaagGGAUGUGa -3' miRNA: 3'- -UGCCGAAugCCa---ACGAAg--CCUACAUc -5' |
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| 2714 | 3' | -50.7 | NC_001491.2 | + | 135735 | 1.09 | 0.008486 |
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Target: 5'- uACGGCUUACGGUUGCUUCGGAUGUAGa -3' miRNA: 3'- -UGCCGAAUGCCAACGAAGCCUACAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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