miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2714 5' -52.3 NC_001491.2 + 66212 0.66 0.982219
Target:  5'- cCCCCAgA-CACUGucgGCGGCUGGCGc -3'
miRNA:   3'- -GGGGUgUgGUGGUua-CGUUGAUCGUc -5'
2714 5' -52.3 NC_001491.2 + 90090 0.66 0.982219
Target:  5'- gCCaCGCGCCugUAGUGCAucuCUGGg-- -3'
miRNA:   3'- gGG-GUGUGGugGUUACGUu--GAUCguc -5'
2714 5' -52.3 NC_001491.2 + 110912 0.66 0.982219
Target:  5'- cCCCCGgGaCCAacCCGuUGCAccauCUGGCAGu -3'
miRNA:   3'- -GGGGUgU-GGU--GGUuACGUu---GAUCGUC- -5'
2714 5' -52.3 NC_001491.2 + 114431 0.66 0.982219
Target:  5'- cUCCC-CGCCGCCGAgccccgcggGuCGACUGGgAGc -3'
miRNA:   3'- -GGGGuGUGGUGGUUa--------C-GUUGAUCgUC- -5'
2714 5' -52.3 NC_001491.2 + 124493 0.66 0.981594
Target:  5'- uCCCCugACCcccaccccagagggGCCAG-GCAGCcccGCAGc -3'
miRNA:   3'- -GGGGugUGG--------------UGGUUaCGUUGau-CGUC- -5'
2714 5' -52.3 NC_001491.2 + 5156 0.66 0.980073
Target:  5'- gUCCCACGCgGCCGA---GGCUGcGCGGu -3'
miRNA:   3'- -GGGGUGUGgUGGUUacgUUGAU-CGUC- -5'
2714 5' -52.3 NC_001491.2 + 139721 0.66 0.980073
Target:  5'- cCCCCGCcacgcaGCCGCCGcgGCGuacCUGcGCGc -3'
miRNA:   3'- -GGGGUG------UGGUGGUuaCGUu--GAU-CGUc -5'
2714 5' -52.3 NC_001491.2 + 122104 0.66 0.980073
Target:  5'- cCCCCACguccgaaaaGCUAUCGuacucGCuGCUGGCAGu -3'
miRNA:   3'- -GGGGUG---------UGGUGGUua---CGuUGAUCGUC- -5'
2714 5' -52.3 NC_001491.2 + 116824 0.66 0.979848
Target:  5'- gCCCAgGCCGCCGcUGCcgcggccAGCcAGCAa -3'
miRNA:   3'- gGGGUgUGGUGGUuACG-------UUGaUCGUc -5'
2714 5' -52.3 NC_001491.2 + 60659 0.66 0.975211
Target:  5'- gCCCCGucgucgguaucCACC-CCuAUGCGACccAGCAGc -3'
miRNA:   3'- -GGGGU-----------GUGGuGGuUACGUUGa-UCGUC- -5'
2714 5' -52.3 NC_001491.2 + 50335 0.66 0.975211
Target:  5'- aCCCACGCCGCagucGCcGGCgAGCGGc -3'
miRNA:   3'- gGGGUGUGGUGguuaCG-UUGaUCGUC- -5'
2714 5' -52.3 NC_001491.2 + 143050 0.67 0.969537
Target:  5'- gCCCCACcCCAUCGAcGUAACacGGCGc -3'
miRNA:   3'- -GGGGUGuGGUGGUUaCGUUGa-UCGUc -5'
2714 5' -52.3 NC_001491.2 + 69261 0.67 0.966376
Target:  5'- gUCCCggcaaACACCACUAAcGCAGCc-GCGGu -3'
miRNA:   3'- -GGGG-----UGUGGUGGUUaCGUUGauCGUC- -5'
2714 5' -52.3 NC_001491.2 + 112035 0.67 0.966376
Target:  5'- -aUCGCuGCCACCAugGCAACUGuuGCAGa -3'
miRNA:   3'- ggGGUG-UGGUGGUuaCGUUGAU--CGUC- -5'
2714 5' -52.3 NC_001491.2 + 39377 0.67 0.966047
Target:  5'- uUCCGCGCCAcggauaauaguguCCAGUGCGugUGGg-- -3'
miRNA:   3'- gGGGUGUGGU-------------GGUUACGUugAUCguc -5'
2714 5' -52.3 NC_001491.2 + 35215 0.67 0.962991
Target:  5'- gUCCaGCACCACCGuggcuaGCAugUAGgGGg -3'
miRNA:   3'- -GGGgUGUGGUGGUua----CGUugAUCgUC- -5'
2714 5' -52.3 NC_001491.2 + 128329 0.67 0.962991
Target:  5'- aCCCCACgGCaCGCgGGUGUgGGCUGGCGu -3'
miRNA:   3'- -GGGGUG-UG-GUGgUUACG-UUGAUCGUc -5'
2714 5' -52.3 NC_001491.2 + 107321 0.67 0.959
Target:  5'- gCCCGCACUuuuggagGCCAAUGCGuaccucacgaagACaGGUAGa -3'
miRNA:   3'- gGGGUGUGG-------UGGUUACGU------------UGaUCGUC- -5'
2714 5' -52.3 NC_001491.2 + 141385 0.68 0.951431
Target:  5'- gCCCCACACUcgaguGCUGGcagucccuccUGCAGCUgcugcccgAGCAGa -3'
miRNA:   3'- -GGGGUGUGG-----UGGUU----------ACGUUGA--------UCGUC- -5'
2714 5' -52.3 NC_001491.2 + 43138 0.68 0.951431
Target:  5'- uUCCCACAgcgaCGCCAAUGCGuucGGUGGg -3'
miRNA:   3'- -GGGGUGUg---GUGGUUACGUugaUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.