miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2714 5' -52.3 NC_001491.2 + 5156 0.66 0.980073
Target:  5'- gUCCCACGCgGCCGA---GGCUGcGCGGu -3'
miRNA:   3'- -GGGGUGUGgUGGUUacgUUGAU-CGUC- -5'
2714 5' -52.3 NC_001491.2 + 15247 0.68 0.937673
Target:  5'- gCCgCACagGCCcCCAAUGCAaacaaaACUGGCAc -3'
miRNA:   3'- -GGgGUG--UGGuGGUUACGU------UGAUCGUc -5'
2714 5' -52.3 NC_001491.2 + 26094 0.72 0.809119
Target:  5'- aCCCACACCGCCuguUGCGcCU-GCGc -3'
miRNA:   3'- gGGGUGUGGUGGuu-ACGUuGAuCGUc -5'
2714 5' -52.3 NC_001491.2 + 35215 0.67 0.962991
Target:  5'- gUCCaGCACCACCGuggcuaGCAugUAGgGGg -3'
miRNA:   3'- -GGGgUGUGGUGGUua----CGUugAUCgUC- -5'
2714 5' -52.3 NC_001491.2 + 35969 0.68 0.951431
Target:  5'- gCCCugGCCAgCugcGUGUGGCgugugAGCAGa -3'
miRNA:   3'- gGGGugUGGUgGu--UACGUUGa----UCGUC- -5'
2714 5' -52.3 NC_001491.2 + 39377 0.67 0.966047
Target:  5'- uUCCGCGCCAcggauaauaguguCCAGUGCGugUGGg-- -3'
miRNA:   3'- gGGGUGUGGU-------------GGUUACGUugAUCguc -5'
2714 5' -52.3 NC_001491.2 + 43138 0.68 0.951431
Target:  5'- uUCCCACAgcgaCGCCAAUGCGuucGGUGGg -3'
miRNA:   3'- -GGGGUGUg---GUGGUUACGUugaUCGUC- -5'
2714 5' -52.3 NC_001491.2 + 50335 0.66 0.975211
Target:  5'- aCCCACGCCGCagucGCcGGCgAGCGGc -3'
miRNA:   3'- gGGGUGUGGUGguuaCG-UUGaUCGUC- -5'
2714 5' -52.3 NC_001491.2 + 60659 0.66 0.975211
Target:  5'- gCCCCGucgucgguaucCACC-CCuAUGCGACccAGCAGc -3'
miRNA:   3'- -GGGGU-----------GUGGuGGuUACGUUGa-UCGUC- -5'
2714 5' -52.3 NC_001491.2 + 66212 0.66 0.982219
Target:  5'- cCCCCAgA-CACUGucgGCGGCUGGCGc -3'
miRNA:   3'- -GGGGUgUgGUGGUua-CGUUGAUCGUc -5'
2714 5' -52.3 NC_001491.2 + 69261 0.67 0.966376
Target:  5'- gUCCCggcaaACACCACUAAcGCAGCc-GCGGu -3'
miRNA:   3'- -GGGG-----UGUGGUGGUUaCGUUGauCGUC- -5'
2714 5' -52.3 NC_001491.2 + 73982 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5'
2714 5' -52.3 NC_001491.2 + 74014 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5'
2714 5' -52.3 NC_001491.2 + 74046 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5'
2714 5' -52.3 NC_001491.2 + 74078 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5'
2714 5' -52.3 NC_001491.2 + 74110 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5'
2714 5' -52.3 NC_001491.2 + 74142 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5'
2714 5' -52.3 NC_001491.2 + 74174 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5'
2714 5' -52.3 NC_001491.2 + 74206 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5'
2714 5' -52.3 NC_001491.2 + 74238 0.73 0.711519
Target:  5'- cCCgCCGCGCCGCCGccGCAGC-AGCc- -3'
miRNA:   3'- -GG-GGUGUGGUGGUuaCGUUGaUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.