miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 18228 0.66 0.893152
Target:  5'- gAGACGCCcuguccagcaGCAGCAGcaGCGCCcUGuGCAg -3'
miRNA:   3'- gUCUGUGG----------UGUCGUU--UGUGGuGC-CGU- -5'
27140 3' -53.6 NC_005832.1 + 36624 0.66 0.921405
Target:  5'- -cGugGCCGCcggcuacgucuuuacGGCGGGCccCCACGGCu -3'
miRNA:   3'- guCugUGGUG---------------UCGUUUGu-GGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 77142 0.66 0.924866
Target:  5'- cCAGACGCCAgcUGGCuuACugCuuucacCGGCGa -3'
miRNA:   3'- -GUCUGUGGU--GUCGuuUGugGu-----GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 29917 0.66 0.900013
Target:  5'- aCAGAgGCCuggucugggGCGGCGGGgGCgGCGGUg -3'
miRNA:   3'- -GUCUgUGG---------UGUCGUUUgUGgUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 19904 0.66 0.900013
Target:  5'- aCGGGCGCCGgGGgaAAGCGCCuCGGgGg -3'
miRNA:   3'- -GUCUGUGGUgUCg-UUUGUGGuGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 4426 0.67 0.878676
Target:  5'- -cGACACUGCccUGAACGCUACGGCu -3'
miRNA:   3'- guCUGUGGUGucGUUUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 53777 0.67 0.886038
Target:  5'- aAGGCACCgGCGGCc-GCGCUacacGCGGCc -3'
miRNA:   3'- gUCUGUGG-UGUCGuuUGUGG----UGCCGu -5'
27140 3' -53.6 NC_005832.1 + 99737 0.67 0.871071
Target:  5'- aAGGCcccCUACAGCAAGucgGCCAUGGCu -3'
miRNA:   3'- gUCUGu--GGUGUCGUUUg--UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 82177 0.67 0.855158
Target:  5'- gAGGCGCgAC-GCAuACgugugccccuuuGCCACGGCAg -3'
miRNA:   3'- gUCUGUGgUGuCGUuUG------------UGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 81093 0.67 0.871071
Target:  5'- -cGACGCCACccucagGGCGuACACCAgccuccUGGCGg -3'
miRNA:   3'- guCUGUGGUG------UCGUuUGUGGU------GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 5598 0.67 0.885313
Target:  5'- aCGGGgACCACauggagacGGCGGACGgaucuccCCugGGCAg -3'
miRNA:   3'- -GUCUgUGGUG--------UCGUUUGU-------GGugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 12437 0.67 0.855158
Target:  5'- gCAGACACg--GGCuucuGCACCAUGGCc -3'
miRNA:   3'- -GUCUGUGgugUCGuu--UGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 14078 0.67 0.855158
Target:  5'- uGGACaaACCaACAGUAgaAGCGCCAgUGGCAc -3'
miRNA:   3'- gUCUG--UGG-UGUCGU--UUGUGGU-GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 44528 0.67 0.855158
Target:  5'- -cGGgACCGCGGCGuGCAagCugGGCAa -3'
miRNA:   3'- guCUgUGGUGUCGUuUGUg-GugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 31683 0.67 0.878676
Target:  5'- cCAGAuCACCACGGCcguGgACCACGuCGu -3'
miRNA:   3'- -GUCU-GUGGUGUCGuu-UgUGGUGCcGU- -5'
27140 3' -53.6 NC_005832.1 + 55988 0.68 0.846864
Target:  5'- aCAGACuACUgggggACGGUGGACcccaccACCACGGCGg -3'
miRNA:   3'- -GUCUG-UGG-----UGUCGUUUG------UGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 90078 0.68 0.846864
Target:  5'- cCGGAUuuccucCCACAaaGAugGCCGCGGCGu -3'
miRNA:   3'- -GUCUGu-----GGUGUcgUUugUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 17340 0.68 0.838354
Target:  5'- uGGACGCCugGaGCGAguACACCAUGcCAg -3'
miRNA:   3'- gUCUGUGGugU-CGUU--UGUGGUGCcGU- -5'
27140 3' -53.6 NC_005832.1 + 19662 0.68 0.82431
Target:  5'- gAGAC-CCGCAGCGGGuucgaaagccgcagcCGgCGCGGCGg -3'
miRNA:   3'- gUCUGuGGUGUCGUUU---------------GUgGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 25918 0.68 0.838354
Target:  5'- -uGACgaACCACAGCAGcucCGCCgugACGGCu -3'
miRNA:   3'- guCUG--UGGUGUCGUUu--GUGG---UGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.