Results 61 - 80 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 20161 | 0.66 | 0.906617 |
Target: 5'- uGGugGCgCACAGCAucgcguccgcCGCCugGGUg -3' miRNA: 3'- gUCugUG-GUGUCGUuu--------GUGGugCCGu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 36624 | 0.66 | 0.921405 |
Target: 5'- -cGugGCCGCcggcuacgucuuuacGGCGGGCccCCACGGCu -3' miRNA: 3'- guCugUGGUG---------------UCGUUUGu-GGUGCCGu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 49322 | 0.66 | 0.919046 |
Target: 5'- aUAGACAUUuCcGCAAACGCCACGuCGg -3' miRNA: 3'- -GUCUGUGGuGuCGUUUGUGGUGCcGU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 95353 | 0.66 | 0.912963 |
Target: 5'- aGGACcguaaaGCCGgGGCGGucuggguucuGCGCCACGGaCAa -3' miRNA: 3'- gUCUG------UGGUgUCGUU----------UGUGGUGCC-GU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 96780 | 0.66 | 0.912963 |
Target: 5'- uGGACACaGCAGgAgggggugacAACGuCCACGGCGu -3' miRNA: 3'- gUCUGUGgUGUCgU---------UUGU-GGUGCCGU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 94668 | 0.66 | 0.912963 |
Target: 5'- uGGACACCcuguACGGCAccaggAACGCCA-GGUu -3' miRNA: 3'- gUCUGUGG----UGUCGU-----UUGUGGUgCCGu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 67089 | 0.66 | 0.912963 |
Target: 5'- aAGACACCagGCAGCAGAUgucguGCCACu--- -3' miRNA: 3'- gUCUGUGG--UGUCGUUUG-----UGGUGccgu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 75543 | 0.66 | 0.900013 |
Target: 5'- --aGCACuCACAGUGugaGCCACGGCc -3' miRNA: 3'- gucUGUG-GUGUCGUuugUGGUGCCGu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 66781 | 0.66 | 0.900013 |
Target: 5'- gAGACcugaCACAGCAcgGACGCCACGu-- -3' miRNA: 3'- gUCUGug--GUGUCGU--UUGUGGUGCcgu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 31883 | 0.66 | 0.899338 |
Target: 5'- gGGAUGCaGCAGCAAgggaugcACGCCAgGGUg -3' miRNA: 3'- gUCUGUGgUGUCGUU-------UGUGGUgCCGu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 20095 | 0.66 | 0.919046 |
Target: 5'- uGGACAUgGCGGCAGAgGgCAaagacaGGCAc -3' miRNA: 3'- gUCUGUGgUGUCGUUUgUgGUg-----CCGU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 77142 | 0.66 | 0.924866 |
Target: 5'- cCAGACGCCAgcUGGCuuACugCuuucacCGGCGa -3' miRNA: 3'- -GUCUGUGGU--GUCGuuUGugGu-----GCCGU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 56202 | 0.66 | 0.899338 |
Target: 5'- aGGGCACCGuaaccguCGGUGGACuugagcuuggccACCGCGGCu -3' miRNA: 3'- gUCUGUGGU-------GUCGUUUG------------UGGUGCCGu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 103993 | 0.66 | 0.893152 |
Target: 5'- gCGGACGCCGugggGGUAGACAaCAUGGCc -3' miRNA: 3'- -GUCUGUGGUg---UCGUUUGUgGUGCCGu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 74568 | 0.66 | 0.893152 |
Target: 5'- -cGGCAuCCAgGGCAAACACgGCGuGUu -3' miRNA: 3'- guCUGU-GGUgUCGUUUGUGgUGC-CGu -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 55540 | 0.66 | 0.908548 |
Target: 5'- cCAGuCcCCACGGCAggagacaucucggagGACGCCAcacugucCGGCAu -3' miRNA: 3'- -GUCuGuGGUGUCGU---------------UUGUGGU-------GCCGU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 96732 | 0.66 | 0.893152 |
Target: 5'- uGGcCACCgucuuugagACGGCAGACucUCACGGCGu -3' miRNA: 3'- gUCuGUGG---------UGUCGUUUGu-GGUGCCGU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 3753 | 0.66 | 0.906617 |
Target: 5'- gUAGACAgUcCGGCuacgucCACCAUGGCAg -3' miRNA: 3'- -GUCUGUgGuGUCGuuu---GUGGUGCCGU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 18228 | 0.66 | 0.893152 |
Target: 5'- gAGACGCCcuguccagcaGCAGCAGcaGCGCCcUGuGCAg -3' miRNA: 3'- gUCUGUGG----------UGUCGUU--UGUGGuGC-CGU- -5' |
|||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 66579 | 0.66 | 0.895927 |
Target: 5'- aCAG-CACCGCGGUacucuucuuaacguuGAGgACCuCGGCAg -3' miRNA: 3'- -GUCuGUGGUGUCG---------------UUUgUGGuGCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home