Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 55988 | 0.68 | 0.846864 |
Target: 5'- aCAGACuACUgggggACGGUGGACcccaccACCACGGCGg -3' miRNA: 3'- -GUCUG-UGG-----UGUCGUUUG------UGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 56202 | 0.66 | 0.899338 |
Target: 5'- aGGGCACCGuaaccguCGGUGGACuugagcuuggccACCGCGGCu -3' miRNA: 3'- gUCUGUGGU-------GUCGUUUG------------UGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 56772 | 0.8 | 0.244507 |
Target: 5'- cCAGACACCGCGGCcuGCGCcugCugGGCGa -3' miRNA: 3'- -GUCUGUGGUGUCGuuUGUG---GugCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 56917 | 0.69 | 0.763589 |
Target: 5'- aUAGACaacaucGCC-CAGCAGGCgcagGCCGCGGUg -3' miRNA: 3'- -GUCUG------UGGuGUCGUUUG----UGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 65626 | 0.69 | 0.773494 |
Target: 5'- -uGGgACCGgAGCAcaugGACACCACGGgGa -3' miRNA: 3'- guCUgUGGUgUCGU----UUGUGGUGCCgU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 66392 | 0.7 | 0.712345 |
Target: 5'- uCAGACACCAgGGaCGGAgACgGgGGCAu -3' miRNA: 3'- -GUCUGUGGUgUC-GUUUgUGgUgCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 66579 | 0.66 | 0.895927 |
Target: 5'- aCAG-CACCGCGGUacucuucuuaacguuGAGgACCuCGGCAg -3' miRNA: 3'- -GUCuGUGGUGUCG---------------UUUgUGGuGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 66781 | 0.66 | 0.900013 |
Target: 5'- gAGACcugaCACAGCAcgGACGCCACGu-- -3' miRNA: 3'- gUCUGug--GUGUCGU--UUGUGGUGCcgu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 67089 | 0.66 | 0.912963 |
Target: 5'- aAGACACCagGCAGCAGAUgucguGCCACu--- -3' miRNA: 3'- gUCUGUGG--UGUCGUUUG-----UGGUGccgu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 67180 | 0.69 | 0.78326 |
Target: 5'- uCAGGCcucuuuacgcCCGCGGCccuCGCCACGGCc -3' miRNA: 3'- -GUCUGu---------GGUGUCGuuuGUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 67580 | 0.69 | 0.773494 |
Target: 5'- gAGACuuCCACAGCcucuugagguGAGCcgccGCCGCGGCc -3' miRNA: 3'- gUCUGu-GGUGUCG----------UUUG----UGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 68726 | 0.69 | 0.799511 |
Target: 5'- aAGGC-CCGCGGCGcACACugcauccgucaccgCACGGCGu -3' miRNA: 3'- gUCUGuGGUGUCGUuUGUG--------------GUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 69166 | 0.69 | 0.795729 |
Target: 5'- aCGGACGCCACAGUcuuauagucccuuacCACUACGGgGa -3' miRNA: 3'- -GUCUGUGGUGUCGuuu------------GUGGUGCCgU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 70728 | 0.69 | 0.753555 |
Target: 5'- gAGAgGCCGCcGCA---GCCGCGGCu -3' miRNA: 3'- gUCUgUGGUGuCGUuugUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 71395 | 0.72 | 0.616204 |
Target: 5'- -cGACauugGCCAC-GCAGACACCgccGCGGCGu -3' miRNA: 3'- guCUG----UGGUGuCGUUUGUGG---UGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 74568 | 0.66 | 0.893152 |
Target: 5'- -cGGCAuCCAgGGCAAACACgGCGuGUu -3' miRNA: 3'- guCUGU-GGUgUCGUUUGUGgUGC-CGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 75543 | 0.66 | 0.900013 |
Target: 5'- --aGCACuCACAGUGugaGCCACGGCc -3' miRNA: 3'- gucUGUG-GUGUCGUuugUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 75895 | 0.71 | 0.669925 |
Target: 5'- uGGACcucucgcCCGCAGCGGACcUCACGGCc -3' miRNA: 3'- gUCUGu------GGUGUCGUUUGuGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 77142 | 0.66 | 0.924866 |
Target: 5'- cCAGACGCCAgcUGGCuuACugCuuucacCGGCGa -3' miRNA: 3'- -GUCUGUGGU--GUCGuuUGugGu-----GCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 79635 | 0.68 | 0.820721 |
Target: 5'- -uGAgACCaaACAGCAAguggacggccuACACCACuGGCAa -3' miRNA: 3'- guCUgUGG--UGUCGUU-----------UGUGGUG-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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