miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 81093 0.67 0.871071
Target:  5'- -cGACGCCACccucagGGCGuACACCAgccuccUGGCGg -3'
miRNA:   3'- guCUGUGGUG------UCGUuUGUGGU------GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 79635 0.68 0.820721
Target:  5'- -uGAgACCaaACAGCAAguggacggccuACACCACuGGCAa -3'
miRNA:   3'- guCUgUGG--UGUCGUU-----------UGUGGUG-CCGU- -5'
27140 3' -53.6 NC_005832.1 + 77142 0.66 0.924866
Target:  5'- cCAGACGCCAgcUGGCuuACugCuuucacCGGCGa -3'
miRNA:   3'- -GUCUGUGGU--GUCGuuUGugGu-----GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 75895 0.71 0.669925
Target:  5'- uGGACcucucgcCCGCAGCGGACcUCACGGCc -3'
miRNA:   3'- gUCUGu------GGUGUCGUUUGuGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 75543 0.66 0.900013
Target:  5'- --aGCACuCACAGUGugaGCCACGGCc -3'
miRNA:   3'- gucUGUG-GUGUCGUuugUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 74568 0.66 0.893152
Target:  5'- -cGGCAuCCAgGGCAAACACgGCGuGUu -3'
miRNA:   3'- guCUGU-GGUgUCGUUUGUGgUGC-CGu -5'
27140 3' -53.6 NC_005832.1 + 71395 0.72 0.616204
Target:  5'- -cGACauugGCCAC-GCAGACACCgccGCGGCGu -3'
miRNA:   3'- guCUG----UGGUGuCGUUUGUGG---UGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 70728 0.69 0.753555
Target:  5'- gAGAgGCCGCcGCA---GCCGCGGCu -3'
miRNA:   3'- gUCUgUGGUGuCGUuugUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 69166 0.69 0.795729
Target:  5'- aCGGACGCCACAGUcuuauagucccuuacCACUACGGgGa -3'
miRNA:   3'- -GUCUGUGGUGUCGuuu------------GUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 68726 0.69 0.799511
Target:  5'- aAGGC-CCGCGGCGcACACugcauccgucaccgCACGGCGu -3'
miRNA:   3'- gUCUGuGGUGUCGUuUGUG--------------GUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 67580 0.69 0.773494
Target:  5'- gAGACuuCCACAGCcucuugagguGAGCcgccGCCGCGGCc -3'
miRNA:   3'- gUCUGu-GGUGUCG----------UUUG----UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 67180 0.69 0.78326
Target:  5'- uCAGGCcucuuuacgcCCGCGGCccuCGCCACGGCc -3'
miRNA:   3'- -GUCUGu---------GGUGUCGuuuGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 67089 0.66 0.912963
Target:  5'- aAGACACCagGCAGCAGAUgucguGCCACu--- -3'
miRNA:   3'- gUCUGUGG--UGUCGUUUG-----UGGUGccgu -5'
27140 3' -53.6 NC_005832.1 + 66781 0.66 0.900013
Target:  5'- gAGACcugaCACAGCAcgGACGCCACGu-- -3'
miRNA:   3'- gUCUGug--GUGUCGU--UUGUGGUGCcgu -5'
27140 3' -53.6 NC_005832.1 + 66579 0.66 0.895927
Target:  5'- aCAG-CACCGCGGUacucuucuuaacguuGAGgACCuCGGCAg -3'
miRNA:   3'- -GUCuGUGGUGUCG---------------UUUgUGGuGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 66392 0.7 0.712345
Target:  5'- uCAGACACCAgGGaCGGAgACgGgGGCAu -3'
miRNA:   3'- -GUCUGUGGUgUC-GUUUgUGgUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 65626 0.69 0.773494
Target:  5'- -uGGgACCGgAGCAcaugGACACCACGGgGa -3'
miRNA:   3'- guCUgUGGUgUCGU----UUGUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 56917 0.69 0.763589
Target:  5'- aUAGACaacaucGCC-CAGCAGGCgcagGCCGCGGUg -3'
miRNA:   3'- -GUCUG------UGGuGUCGUUUG----UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 56772 0.8 0.244507
Target:  5'- cCAGACACCGCGGCcuGCGCcugCugGGCGa -3'
miRNA:   3'- -GUCUGUGGUGUCGuuUGUG---GugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 56202 0.66 0.899338
Target:  5'- aGGGCACCGuaaccguCGGUGGACuugagcuuggccACCGCGGCu -3'
miRNA:   3'- gUCUGUGGU-------GUCGUUUG------------UGGUGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.