miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 56772 0.8 0.244507
Target:  5'- cCAGACACCGCGGCcuGCGCcugCugGGCGa -3'
miRNA:   3'- -GUCUGUGGUGUCGuuUGUG---GugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 4132 1.09 0.003009
Target:  5'- gCAGACACCACAGCAAACACCACGGCAg -3'
miRNA:   3'- -GUCUGUGGUGUCGUUUGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 32795 0.68 0.820721
Target:  5'- cCAGGCACCACGaCu-GCACCACcGCc -3'
miRNA:   3'- -GUCUGUGGUGUcGuuUGUGGUGcCGu -5'
27140 3' -53.6 NC_005832.1 + 79635 0.68 0.820721
Target:  5'- -uGAgACCaaACAGCAAguggacggccuACACCACuGGCAa -3'
miRNA:   3'- guCUgUGG--UGUCGUU-----------UGUGGUG-CCGU- -5'
27140 3' -53.6 NC_005832.1 + 20095 0.66 0.919046
Target:  5'- uGGACAUgGCGGCAGAgGgCAaagacaGGCAc -3'
miRNA:   3'- gUCUGUGgUGUCGUUUgUgGUg-----CCGU- -5'
27140 3' -53.6 NC_005832.1 + 104681 0.66 0.917249
Target:  5'- gAGACGCCGauaaccucaagaccUAGUuccgcGACGCUACGGUAa -3'
miRNA:   3'- gUCUGUGGU--------------GUCGu----UUGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 55540 0.66 0.908548
Target:  5'- cCAGuCcCCACGGCAggagacaucucggagGACGCCAcacugucCGGCAu -3'
miRNA:   3'- -GUCuGuGGUGUCGU---------------UUGUGGU-------GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 56202 0.66 0.899338
Target:  5'- aGGGCACCGuaaccguCGGUGGACuugagcuuggccACCGCGGCu -3'
miRNA:   3'- gUCUGUGGU-------GUCGUUUG------------UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 3753 0.66 0.906617
Target:  5'- gUAGACAgUcCGGCuacgucCACCAUGGCAg -3'
miRNA:   3'- -GUCUGUgGuGUCGuuu---GUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 103993 0.66 0.893152
Target:  5'- gCGGACGCCGugggGGUAGACAaCAUGGCc -3'
miRNA:   3'- -GUCUGUGGUg---UCGUUUGUgGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 96732 0.66 0.893152
Target:  5'- uGGcCACCgucuuugagACGGCAGACucUCACGGCGu -3'
miRNA:   3'- gUCuGUGG---------UGUCGUUUGu-GGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 74568 0.66 0.893152
Target:  5'- -cGGCAuCCAgGGCAAACACgGCGuGUu -3'
miRNA:   3'- guCUGU-GGUgUCGUUUGUGgUGC-CGu -5'
27140 3' -53.6 NC_005832.1 + 5598 0.67 0.885313
Target:  5'- aCGGGgACCACauggagacGGCGGACGgaucuccCCugGGCAg -3'
miRNA:   3'- -GUCUgUGGUG--------UCGUUUGU-------GGugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 31683 0.67 0.878676
Target:  5'- cCAGAuCACCACGGCcguGgACCACGuCGu -3'
miRNA:   3'- -GUCU-GUGGUGUCGuu-UgUGGUGCcGU- -5'
27140 3' -53.6 NC_005832.1 + 44528 0.67 0.855158
Target:  5'- -cGGgACCGCGGCGuGCAagCugGGCAa -3'
miRNA:   3'- guCUgUGGUGUCGUuUGUg-GugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 14078 0.67 0.855158
Target:  5'- uGGACaaACCaACAGUAgaAGCGCCAgUGGCAc -3'
miRNA:   3'- gUCUG--UGG-UGUCGU--UUGUGGU-GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 12437 0.67 0.855158
Target:  5'- gCAGACACg--GGCuucuGCACCAUGGCc -3'
miRNA:   3'- -GUCUGUGgugUCGuu--UGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 90078 0.68 0.846864
Target:  5'- cCGGAUuuccucCCACAaaGAugGCCGCGGCGu -3'
miRNA:   3'- -GUCUGu-----GGUGUcgUUugUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 25918 0.68 0.838354
Target:  5'- -uGACgaACCACAGCAGcucCGCCgugACGGCu -3'
miRNA:   3'- guCUG--UGGUGUCGUUu--GUGG---UGCCGu -5'
27140 3' -53.6 NC_005832.1 + 19662 0.68 0.82431
Target:  5'- gAGAC-CCGCAGCGGGuucgaaagccgcagcCGgCGCGGCGg -3'
miRNA:   3'- gUCUGuGGUGUCGUUU---------------GUgGUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.