Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 66579 | 0.66 | 0.895927 |
Target: 5'- aCAG-CACCGCGGUacucuucuuaacguuGAGgACCuCGGCAg -3' miRNA: 3'- -GUCuGUGGUGUCG---------------UUUgUGGuGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 103993 | 0.66 | 0.893152 |
Target: 5'- gCGGACGCCGugggGGUAGACAaCAUGGCc -3' miRNA: 3'- -GUCUGUGGUg---UCGUUUGUgGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 96732 | 0.66 | 0.893152 |
Target: 5'- uGGcCACCgucuuugagACGGCAGACucUCACGGCGu -3' miRNA: 3'- gUCuGUGG---------UGUCGUUUGu-GGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 74568 | 0.66 | 0.893152 |
Target: 5'- -cGGCAuCCAgGGCAAACACgGCGuGUu -3' miRNA: 3'- guCUGU-GGUgUCGUUUGUGgUGC-CGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 18228 | 0.66 | 0.893152 |
Target: 5'- gAGACGCCcuguccagcaGCAGCAGcaGCGCCcUGuGCAg -3' miRNA: 3'- gUCUGUGG----------UGUCGUU--UGUGGuGC-CGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 53777 | 0.67 | 0.886038 |
Target: 5'- aAGGCACCgGCGGCc-GCGCUacacGCGGCc -3' miRNA: 3'- gUCUGUGG-UGUCGuuUGUGG----UGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 5598 | 0.67 | 0.885313 |
Target: 5'- aCGGGgACCACauggagacGGCGGACGgaucuccCCugGGCAg -3' miRNA: 3'- -GUCUgUGGUG--------UCGUUUGU-------GGugCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 31683 | 0.67 | 0.878676 |
Target: 5'- cCAGAuCACCACGGCcguGgACCACGuCGu -3' miRNA: 3'- -GUCU-GUGGUGUCGuu-UgUGGUGCcGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 4426 | 0.67 | 0.878676 |
Target: 5'- -cGACACUGCccUGAACGCUACGGCu -3' miRNA: 3'- guCUGUGGUGucGUUUGUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 81093 | 0.67 | 0.871071 |
Target: 5'- -cGACGCCACccucagGGCGuACACCAgccuccUGGCGg -3' miRNA: 3'- guCUGUGGUG------UCGUuUGUGGU------GCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 99737 | 0.67 | 0.871071 |
Target: 5'- aAGGCcccCUACAGCAAGucgGCCAUGGCu -3' miRNA: 3'- gUCUGu--GGUGUCGUUUg--UGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 12437 | 0.67 | 0.855158 |
Target: 5'- gCAGACACg--GGCuucuGCACCAUGGCc -3' miRNA: 3'- -GUCUGUGgugUCGuu--UGUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 14078 | 0.67 | 0.855158 |
Target: 5'- uGGACaaACCaACAGUAgaAGCGCCAgUGGCAc -3' miRNA: 3'- gUCUG--UGG-UGUCGU--UUGUGGU-GCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 82177 | 0.67 | 0.855158 |
Target: 5'- gAGGCGCgAC-GCAuACgugugccccuuuGCCACGGCAg -3' miRNA: 3'- gUCUGUGgUGuCGUuUG------------UGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 44528 | 0.67 | 0.855158 |
Target: 5'- -cGGgACCGCGGCGuGCAagCugGGCAa -3' miRNA: 3'- guCUgUGGUGUCGUuUGUg-GugCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 90078 | 0.68 | 0.846864 |
Target: 5'- cCGGAUuuccucCCACAaaGAugGCCGCGGCGu -3' miRNA: 3'- -GUCUGu-----GGUGUcgUUugUGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 55988 | 0.68 | 0.846864 |
Target: 5'- aCAGACuACUgggggACGGUGGACcccaccACCACGGCGg -3' miRNA: 3'- -GUCUG-UGG-----UGUCGUUUG------UGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 85551 | 0.68 | 0.841783 |
Target: 5'- gCAGACGgCAUAGCucACauuauuccaaccaccGCCACGGUg -3' miRNA: 3'- -GUCUGUgGUGUCGuuUG---------------UGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 25918 | 0.68 | 0.838354 |
Target: 5'- -uGACgaACCACAGCAGcucCGCCgugACGGCu -3' miRNA: 3'- guCUG--UGGUGUCGUUu--GUGG---UGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 17340 | 0.68 | 0.838354 |
Target: 5'- uGGACGCCugGaGCGAguACACCAUGcCAg -3' miRNA: 3'- gUCUGUGGugU-CGUU--UGUGGUGCcGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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