Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27140 | 5' | -54.7 | NC_005832.1 | + | 7918 | 0.66 | 0.879491 |
Target: 5'- -aCACcGGGA-GUGCCGcCGaccUGCACCg -3' miRNA: 3'- gcGUGaCUCUaCACGGCuGC---ACGUGG- -5' |
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27140 | 5' | -54.7 | NC_005832.1 | + | 49027 | 0.67 | 0.875074 |
Target: 5'- aGCACUGAGAaGUGUuuggguuaaagucccUGACGUagaggaggucGCACUc -3' miRNA: 3'- gCGUGACUCUaCACG---------------GCUGCA----------CGUGG- -5' |
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27140 | 5' | -54.7 | NC_005832.1 | + | 35437 | 0.67 | 0.864447 |
Target: 5'- gGgAgUGGGGUacGUGaCCGACGUGCugUc -3' miRNA: 3'- gCgUgACUCUA--CAC-GGCUGCACGugG- -5' |
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27140 | 5' | -54.7 | NC_005832.1 | + | 15604 | 0.68 | 0.799709 |
Target: 5'- uGCAcCUGAGAUcucaggauccucgcaGggucGCCGGCGUGguCCu -3' miRNA: 3'- gCGU-GACUCUA---------------Ca---CGGCUGCACguGG- -5' |
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27140 | 5' | -54.7 | NC_005832.1 | + | 11590 | 0.68 | 0.796012 |
Target: 5'- aCGCGCcGGGcaccgGCaaGACGUGCACCg -3' miRNA: 3'- -GCGUGaCUCuaca-CGg-CUGCACGUGG- -5' |
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27140 | 5' | -54.7 | NC_005832.1 | + | 31416 | 0.7 | 0.675236 |
Target: 5'- gCGCACUGGGccacauaagacacGUG-GCCGugG-GCACa -3' miRNA: 3'- -GCGUGACUC-------------UACaCGGCugCaCGUGg -5' |
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27140 | 5' | -54.7 | NC_005832.1 | + | 4171 | 1.12 | 0.001757 |
Target: 5'- uCGCACUGAGAUGUGCCGACGUGCACCu -3' miRNA: 3'- -GCGUGACUCUACACGGCUGCACGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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