miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 5' -54.7 NC_005832.1 + 7918 0.66 0.879491
Target:  5'- -aCACcGGGA-GUGCCGcCGaccUGCACCg -3'
miRNA:   3'- gcGUGaCUCUaCACGGCuGC---ACGUGG- -5'
27140 5' -54.7 NC_005832.1 + 49027 0.67 0.875074
Target:  5'- aGCACUGAGAaGUGUuuggguuaaagucccUGACGUagaggaggucGCACUc -3'
miRNA:   3'- gCGUGACUCUaCACG---------------GCUGCA----------CGUGG- -5'
27140 5' -54.7 NC_005832.1 + 35437 0.67 0.864447
Target:  5'- gGgAgUGGGGUacGUGaCCGACGUGCugUc -3'
miRNA:   3'- gCgUgACUCUA--CAC-GGCUGCACGugG- -5'
27140 5' -54.7 NC_005832.1 + 15604 0.68 0.799709
Target:  5'- uGCAcCUGAGAUcucaggauccucgcaGggucGCCGGCGUGguCCu -3'
miRNA:   3'- gCGU-GACUCUA---------------Ca---CGGCUGCACguGG- -5'
27140 5' -54.7 NC_005832.1 + 11590 0.68 0.796012
Target:  5'- aCGCGCcGGGcaccgGCaaGACGUGCACCg -3'
miRNA:   3'- -GCGUGaCUCuaca-CGg-CUGCACGUGG- -5'
27140 5' -54.7 NC_005832.1 + 31416 0.7 0.675236
Target:  5'- gCGCACUGGGccacauaagacacGUG-GCCGugG-GCACa -3'
miRNA:   3'- -GCGUGACUC-------------UACaCGGCugCaCGUGg -5'
27140 5' -54.7 NC_005832.1 + 4171 1.12 0.001757
Target:  5'- uCGCACUGAGAUGUGCCGACGUGCACCu -3'
miRNA:   3'- -GCGUGACUCUACACGGCUGCACGUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.