miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27143 5' -59.5 NC_005832.1 + 95197 0.66 0.673123
Target:  5'- cCCUCCCUuguccgugGC-GCAGaACCCAGacCGCCc -3'
miRNA:   3'- cGGAGGGA--------CGaCGUC-UGGGUU--GCGGu -5'
27143 5' -59.5 NC_005832.1 + 40840 0.66 0.662844
Target:  5'- aGCCaCCCUGCcGUagAGGCCCGGgGgCAu -3'
miRNA:   3'- -CGGaGGGACGaCG--UCUGGGUUgCgGU- -5'
27143 5' -59.5 NC_005832.1 + 19281 0.66 0.656664
Target:  5'- uGCCUU-CUGCaagacucacaggggaUGCAGACCCAGagguuccgcaGCCAa -3'
miRNA:   3'- -CGGAGgGACG---------------ACGUCUGGGUUg---------CGGU- -5'
27143 5' -59.5 NC_005832.1 + 53973 0.66 0.65254
Target:  5'- cCCUCCCgGCUucgGCaAGACCuuCAugGCCc -3'
miRNA:   3'- cGGAGGGaCGA---CG-UCUGG--GUugCGGu -5'
27143 5' -59.5 NC_005832.1 + 33035 0.66 0.642219
Target:  5'- aGCCUCUCgGCUGaGGACgCCGugGUa- -3'
miRNA:   3'- -CGGAGGGaCGACgUCUG-GGUugCGgu -5'
27143 5' -59.5 NC_005832.1 + 87417 0.66 0.63189
Target:  5'- cCCUCCUgaucaggcaucUGCUgGCcauGGACCCGGCGgCAa -3'
miRNA:   3'- cGGAGGG-----------ACGA-CG---UCUGGGUUGCgGU- -5'
27143 5' -59.5 NC_005832.1 + 80049 0.66 0.621561
Target:  5'- aGCU--CCUGCgcGCAGGCCCccauCGCCGa -3'
miRNA:   3'- -CGGagGGACGa-CGUCUGGGuu--GCGGU- -5'
27143 5' -59.5 NC_005832.1 + 93591 0.67 0.611241
Target:  5'- cGCCUCCCgUGCUaGCGGgagcgaucauGCUCAGgGCUc -3'
miRNA:   3'- -CGGAGGG-ACGA-CGUC----------UGGGUUgCGGu -5'
27143 5' -59.5 NC_005832.1 + 69915 0.67 0.611241
Target:  5'- aGUCUCCC-GCUGUgAGAaagucUCCAGCaGCCAa -3'
miRNA:   3'- -CGGAGGGaCGACG-UCU-----GGGUUG-CGGU- -5'
27143 5' -59.5 NC_005832.1 + 69700 0.67 0.611241
Target:  5'- aGUCUCCC-GCUGUgAGAaagucUCCAGCaGCCAa -3'
miRNA:   3'- -CGGAGGGaCGACG-UCU-----GGGUUG-CGGU- -5'
27143 5' -59.5 NC_005832.1 + 48270 0.67 0.611241
Target:  5'- gGCUUCgCCUGCcaccagUGCAgGGCCCA--GCCAg -3'
miRNA:   3'- -CGGAG-GGACG------ACGU-CUGGGUugCGGU- -5'
27143 5' -59.5 NC_005832.1 + 33464 0.67 0.610209
Target:  5'- aGCCUaUCUUGCccGCggcgacccucaggGGACUCGACGCCAa -3'
miRNA:   3'- -CGGA-GGGACGa-CG-------------UCUGGGUUGCGGU- -5'
27143 5' -59.5 NC_005832.1 + 77548 0.67 0.599906
Target:  5'- cCCUCCCUGUggagaacUGUgaaGCCCAugGCUAc -3'
miRNA:   3'- cGGAGGGACG-------ACGuc-UGGGUugCGGU- -5'
27143 5' -59.5 NC_005832.1 + 29223 0.67 0.597849
Target:  5'- cGCCgUCCCUcCU-CAGACCaggugcgggagauaCAACGCCAa -3'
miRNA:   3'- -CGG-AGGGAcGAcGUCUGG--------------GUUGCGGU- -5'
27143 5' -59.5 NC_005832.1 + 10841 0.67 0.580404
Target:  5'- aCCUCCCcgGCaaagGuCAGACCC-GCGUCGg -3'
miRNA:   3'- cGGAGGGa-CGa---C-GUCUGGGuUGCGGU- -5'
27143 5' -59.5 NC_005832.1 + 28106 0.67 0.580404
Target:  5'- aGCCUCCgaGC-GCAGAUUgcgCGACGaCCAg -3'
miRNA:   3'- -CGGAGGgaCGaCGUCUGG---GUUGC-GGU- -5'
27143 5' -59.5 NC_005832.1 + 10462 0.67 0.570191
Target:  5'- aGUCUCCCUGCcGguGgcucuccuccACCCGuuUGCCAg -3'
miRNA:   3'- -CGGAGGGACGaCguC----------UGGGUu-GCGGU- -5'
27143 5' -59.5 NC_005832.1 + 16734 0.67 0.570191
Target:  5'- aGCCagCCCUgGCgGUGGAuCCCAucaagaGCGCCAg -3'
miRNA:   3'- -CGGa-GGGA-CGaCGUCU-GGGU------UGCGGU- -5'
27143 5' -59.5 NC_005832.1 + 2613 0.67 0.570191
Target:  5'- cGCCcCCCUuCUGCAccGACCCGcUGUCAa -3'
miRNA:   3'- -CGGaGGGAcGACGU--CUGGGUuGCGGU- -5'
27143 5' -59.5 NC_005832.1 + 50559 0.67 0.560023
Target:  5'- cGCCUUgacgCC-GCUGagacuGGACCCAGCGUCGu -3'
miRNA:   3'- -CGGAG----GGaCGACg----UCUGGGUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.