miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27149 5' -53.2 NC_005832.1 + 29603 0.66 0.942411
Target:  5'- cUCGGAcuauGUGUCGGACAGggagguggacaucauCAGGGGCa -3'
miRNA:   3'- -GGUCUucc-UACAGUCUGUC---------------GUCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 39542 0.66 0.940476
Target:  5'- uCCGGGAGGAcccgCGGGacCAGUGGGaGACa -3'
miRNA:   3'- -GGUCUUCCUaca-GUCU--GUCGUCC-CUG- -5'
27149 5' -53.2 NC_005832.1 + 37413 0.66 0.940476
Target:  5'- gCCuGuccGGGAUucUCAGAgucUAGCAGGGACc -3'
miRNA:   3'- -GGuCu--UCCUAc-AGUCU---GUCGUCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 66114 0.66 0.932319
Target:  5'- aCCGGGAGGAcGggaAGGgAGCaggaccaccgaucccAGGGACa -3'
miRNA:   3'- -GGUCUUCCUaCag-UCUgUCG---------------UCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 80623 0.66 0.930175
Target:  5'- aCAGggGGucGUCAGACcuGCcccuGGGGAa -3'
miRNA:   3'- gGUCuuCCuaCAGUCUGu-CG----UCCCUg -5'
27149 5' -53.2 NC_005832.1 + 77370 0.66 0.930175
Target:  5'- gUCAGggGGGacaUGUCAGGuauCAGguGcGACa -3'
miRNA:   3'- -GGUCuuCCU---ACAGUCU---GUCguCcCUG- -5'
27149 5' -53.2 NC_005832.1 + 80306 0.66 0.924632
Target:  5'- uCCAGucGGAUGg-AGGCGucauGaCGGGGACg -3'
miRNA:   3'- -GGUCuuCCUACagUCUGU----C-GUCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 8093 0.66 0.924632
Target:  5'- aCCAuGAGGAcgugcgagGUCGGACcccugAGCAGGG-Cg -3'
miRNA:   3'- -GGUcUUCCUa-------CAGUCUG-----UCGUCCCuG- -5'
27149 5' -53.2 NC_005832.1 + 31239 0.67 0.912761
Target:  5'- -uGGAGGGAcGUCcuggGGACAGaCAGGGu- -3'
miRNA:   3'- ggUCUUCCUaCAG----UCUGUC-GUCCCug -5'
27149 5' -53.2 NC_005832.1 + 66426 0.67 0.906436
Target:  5'- uCgGGAAGGAggccucugccUgacacacauauaGUCAGACAcCAGGGACg -3'
miRNA:   3'- -GgUCUUCCU----------A------------CAGUCUGUcGUCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 6613 0.67 0.899854
Target:  5'- uCCaAGggGGAcaUGUuuaaccugacgCAGAUAGCGGGG-Cu -3'
miRNA:   3'- -GG-UCuuCCU--ACA-----------GUCUGUCGUCCCuG- -5'
27149 5' -53.2 NC_005832.1 + 31889 0.68 0.878596
Target:  5'- -aGGAacGGGAUG-CAG-CAGCaAGGGAUg -3'
miRNA:   3'- ggUCU--UCCUACaGUCuGUCG-UCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 162 0.68 0.871023
Target:  5'- -uGGGAGGAguggGUUugggAGGCGGCggaggAGGGACg -3'
miRNA:   3'- ggUCUUCCUa---CAG----UCUGUCG-----UCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 54050 0.68 0.871023
Target:  5'- aCAGGAGGGUGcuggcgacUCAGugG--AGGGACu -3'
miRNA:   3'- gGUCUUCCUAC--------AGUCugUcgUCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 469 0.68 0.871023
Target:  5'- aCAGAAGGAgcccaGGGCGGCGuccuggucGGGGCc -3'
miRNA:   3'- gGUCUUCCUacag-UCUGUCGU--------CCCUG- -5'
27149 5' -53.2 NC_005832.1 + 64971 0.68 0.863215
Target:  5'- aCCGGAGGGuGUGUgGGAagGGUAcguGGGGCa -3'
miRNA:   3'- -GGUCUUCC-UACAgUCUg-UCGU---CCCUG- -5'
27149 5' -53.2 NC_005832.1 + 13504 0.68 0.863215
Target:  5'- uCCAGAAGGaAUG-CuGuACGGCuucGGGGCg -3'
miRNA:   3'- -GGUCUUCC-UACaGuC-UGUCGu--CCCUG- -5'
27149 5' -53.2 NC_005832.1 + 7389 0.68 0.863215
Target:  5'- gCGGGAGGGUGgcuGGACGacGCGGGGuCc -3'
miRNA:   3'- gGUCUUCCUACag-UCUGU--CGUCCCuG- -5'
27149 5' -53.2 NC_005832.1 + 75852 0.68 0.855178
Target:  5'- -gAGGAGGcgGUgAGGCuGaCGGGGAUa -3'
miRNA:   3'- ggUCUUCCuaCAgUCUGuC-GUCCCUG- -5'
27149 5' -53.2 NC_005832.1 + 80592 0.68 0.846921
Target:  5'- aCCAGuguccguucucAGGAUGggagCAGcCAGgGGGGGCa -3'
miRNA:   3'- -GGUCu----------UCCUACa---GUCuGUCgUCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.