miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2715 5' -53.9 NC_001491.2 + 148154 0.66 0.956583
Target:  5'- aCCAggagcUUGCgccugGCGGA-GCCCAGGCGc-- -3'
miRNA:   3'- -GGU-----AACGa----CGUCUgUGGGUCCGUaga -5'
2715 5' -53.9 NC_001491.2 + 58422 0.66 0.95258
Target:  5'- ----cGCUGCAG-CACCUcuGGGCAg-- -3'
miRNA:   3'- gguaaCGACGUCuGUGGG--UCCGUaga -5'
2715 5' -53.9 NC_001491.2 + 116701 0.66 0.948336
Target:  5'- gCCGcgGCcGCuccggggaccaGGGCGCCCAGGcCGUCc -3'
miRNA:   3'- -GGUaaCGaCG-----------UCUGUGGGUCC-GUAGa -5'
2715 5' -53.9 NC_001491.2 + 117438 0.66 0.939112
Target:  5'- gCCccgGCgGCGGcuucguGCGcCCCGGGCGUCUa -3'
miRNA:   3'- -GGuaaCGaCGUC------UGU-GGGUCCGUAGA- -5'
2715 5' -53.9 NC_001491.2 + 135307 0.66 0.938625
Target:  5'- uCCAUgaucGCUGCAGuuuccauACACCCGGuGUaggAUCUu -3'
miRNA:   3'- -GGUAa---CGACGUC-------UGUGGGUC-CG---UAGA- -5'
2715 5' -53.9 NC_001491.2 + 38029 0.67 0.928893
Target:  5'- ----cGCU-CAGaACACCCAcGGCGUCg -3'
miRNA:   3'- gguaaCGAcGUC-UGUGGGU-CCGUAGa -5'
2715 5' -53.9 NC_001491.2 + 96340 0.67 0.917669
Target:  5'- gCCGcuggagGCgcagGCAGGCGCCCAGGaCcgCc -3'
miRNA:   3'- -GGUaa----CGa---CGUCUGUGGGUCC-GuaGa -5'
2715 5' -53.9 NC_001491.2 + 58141 0.67 0.917669
Target:  5'- uCC-UUGCUcaaCAGACGCgCC-GGCAUCUg -3'
miRNA:   3'- -GGuAACGAc--GUCUGUG-GGuCCGUAGA- -5'
2715 5' -53.9 NC_001491.2 + 67065 0.67 0.917669
Target:  5'- aCCGUcGCgGCAGcGCuucCCCcGGCAUCUa -3'
miRNA:   3'- -GGUAaCGaCGUC-UGu--GGGuCCGUAGA- -5'
2715 5' -53.9 NC_001491.2 + 6824 0.68 0.878071
Target:  5'- gCGUgcaGCUGCAGAUgauuACCgGGGCGUg- -3'
miRNA:   3'- gGUAa--CGACGUCUG----UGGgUCCGUAga -5'
2715 5' -53.9 NC_001491.2 + 145058 0.69 0.862983
Target:  5'- ----gGCUGCGGGgACCCcGGGCAggUCUc -3'
miRNA:   3'- gguaaCGACGUCUgUGGG-UCCGU--AGA- -5'
2715 5' -53.9 NC_001491.2 + 17911 0.69 0.83873
Target:  5'- gCCAUUGUUGaCGGAaGCgCCGGGgGUCa -3'
miRNA:   3'- -GGUAACGAC-GUCUgUG-GGUCCgUAGa -5'
2715 5' -53.9 NC_001491.2 + 136932 1.09 0.003848
Target:  5'- gCCAUUGCUGCAGACACCCAGGCAUCUc -3'
miRNA:   3'- -GGUAACGACGUCUGUGGGUCCGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.