miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27157 3' -53 NC_005832.1 + 41975 0.66 0.946948
Target:  5'- cCCGUCAUGGucgguucGGCCGUGUgCUGgacCAGGa -3'
miRNA:   3'- -GGUAGUACUc------CCGGUACGgGAU---GUUC- -5'
27157 3' -53 NC_005832.1 + 50267 0.66 0.935799
Target:  5'- gCGUC--GAGGGCCAccucucugccgccgUGuCCCUGCAc- -3'
miRNA:   3'- gGUAGuaCUCCCGGU--------------AC-GGGAUGUuc -5'
27157 3' -53 NC_005832.1 + 27614 0.67 0.908698
Target:  5'- uCCAUagacggccUGGGGGCaguuGUGgCCUACAAGa -3'
miRNA:   3'- -GGUAgu------ACUCCCGg---UACgGGAUGUUC- -5'
27157 3' -53 NC_005832.1 + 80779 0.67 0.908698
Target:  5'- uCCAUCAggGAGGGaUCGUGCaCC--CAAGa -3'
miRNA:   3'- -GGUAGUa-CUCCC-GGUACG-GGauGUUC- -5'
27157 3' -53 NC_005832.1 + 99708 0.67 0.895419
Target:  5'- uCCGUUu--GGGGCCAgGUCCUACuGGa -3'
miRNA:   3'- -GGUAGuacUCCCGGUaCGGGAUGuUC- -5'
27157 3' -53 NC_005832.1 + 84251 0.68 0.881127
Target:  5'- cCCGUCGUGAGaGCCucaucuCCCgGCAAGa -3'
miRNA:   3'- -GGUAGUACUCcCGGuac---GGGaUGUUC- -5'
27157 3' -53 NC_005832.1 + 24833 0.68 0.873613
Target:  5'- aCGUgGUGuGGGCCAguccCCCgUGCAGGu -3'
miRNA:   3'- gGUAgUACuCCCGGUac--GGG-AUGUUC- -5'
27157 3' -53 NC_005832.1 + 20673 0.68 0.873613
Target:  5'- gCCcUgGUGAGGGCCcUGCCUUcCGGa -3'
miRNA:   3'- -GGuAgUACUCCCGGuACGGGAuGUUc -5'
27157 3' -53 NC_005832.1 + 89805 0.68 0.857876
Target:  5'- aCAggGUGAGGGUCGUcCCCUuCGAGu -3'
miRNA:   3'- gGUagUACUCCCGGUAcGGGAuGUUC- -5'
27157 3' -53 NC_005832.1 + 72734 0.68 0.855437
Target:  5'- gCCGUUggGcaagacgggucccaGGGGCCcagaggGCCCUACAGGc -3'
miRNA:   3'- -GGUAGuaC--------------UCCCGGua----CGGGAUGUUC- -5'
27157 3' -53 NC_005832.1 + 43955 0.69 0.841241
Target:  5'- gCCGUCAUGAuGGCCAccaCCgGCAGGg -3'
miRNA:   3'- -GGUAGUACUcCCGGUacgGGaUGUUC- -5'
27157 3' -53 NC_005832.1 + 7129 0.69 0.832606
Target:  5'- aCCAgCAccucUGAGGGuCCAUGCCgUGCc-- -3'
miRNA:   3'- -GGUaGU----ACUCCC-GGUACGGgAUGuuc -5'
27157 3' -53 NC_005832.1 + 46605 0.69 0.832606
Target:  5'- gCGUCAaGAgGGGCUAcuUGCCCUucCAGGa -3'
miRNA:   3'- gGUAGUaCU-CCCGGU--ACGGGAu-GUUC- -5'
27157 3' -53 NC_005832.1 + 42507 0.69 0.81474
Target:  5'- uCCAUgAgGAGGGCCGccaUGCUCUGguGGu -3'
miRNA:   3'- -GGUAgUaCUCCCGGU---ACGGGAUguUC- -5'
27157 3' -53 NC_005832.1 + 11950 0.69 0.805529
Target:  5'- gCCAUCAcGAGGaGCCcgGCCagagcCAGGg -3'
miRNA:   3'- -GGUAGUaCUCC-CGGuaCGGgau--GUUC- -5'
27157 3' -53 NC_005832.1 + 5995 0.69 0.805529
Target:  5'- gUCAUCAUGAGcGCCAgggGUCCUcacGCAGa -3'
miRNA:   3'- -GGUAGUACUCcCGGUa--CGGGA---UGUUc -5'
27157 3' -53 NC_005832.1 + 95826 0.69 0.804598
Target:  5'- aCCAUCAagagggGAGGGCaCGUguucaggGCCCU-CGAGa -3'
miRNA:   3'- -GGUAGUa-----CUCCCG-GUA-------CGGGAuGUUC- -5'
27157 3' -53 NC_005832.1 + 26637 0.7 0.798977
Target:  5'- uCCAUCAaGAGGGCCGcaaagggagacgcgGCCUUuaaggugGCGAGg -3'
miRNA:   3'- -GGUAGUaCUCCCGGUa-------------CGGGA-------UGUUC- -5'
27157 3' -53 NC_005832.1 + 35279 0.72 0.673788
Target:  5'- aCGUCG-GAGGGCCccUGUCCgaagGCAGGg -3'
miRNA:   3'- gGUAGUaCUCCCGGu-ACGGGa---UGUUC- -5'
27157 3' -53 NC_005832.1 + 95616 0.72 0.64165
Target:  5'- aCCAUCAagagggGAGGGCCcguguucaggGCCCU-CGAGa -3'
miRNA:   3'- -GGUAGUa-----CUCCCGGua--------CGGGAuGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.