Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27157 | 3' | -53 | NC_005832.1 | + | 99708 | 0.67 | 0.895419 |
|
Target: 5'- uCCGUUu--GGGGCCAgGUCCUACuGGa -3' miRNA: 3'- -GGUAGuacUCCCGGUaCGGGAUGuUC- -5' |
|||||||
| 27157 | 3' | -53 | NC_005832.1 | + | 80779 | 0.67 | 0.908698 |
|
Target: 5'- uCCAUCAggGAGGGaUCGUGCaCC--CAAGa -3' miRNA: 3'- -GGUAGUa-CUCCC-GGUACG-GGauGUUC- -5' |
|||||||
| 27157 | 3' | -53 | NC_005832.1 | + | 27614 | 0.67 | 0.908698 |
|
Target: 5'- uCCAUagacggccUGGGGGCaguuGUGgCCUACAAGa -3' miRNA: 3'- -GGUAgu------ACUCCCGg---UACgGGAUGUUC- -5' |
|||||||
| 27157 | 3' | -53 | NC_005832.1 | + | 50267 | 0.66 | 0.935799 |
|
Target: 5'- gCGUC--GAGGGCCAccucucugccgccgUGuCCCUGCAc- -3' miRNA: 3'- gGUAGuaCUCCCGGU--------------AC-GGGAUGUuc -5' |
|||||||
| 27157 | 3' | -53 | NC_005832.1 | + | 41975 | 0.66 | 0.946948 |
|
Target: 5'- cCCGUCAUGGucgguucGGCCGUGUgCUGgacCAGGa -3' miRNA: 3'- -GGUAGUACUc------CCGGUACGgGAU---GUUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home