miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27157 5' -55.4 NC_005832.1 + 6471 0.66 0.892229
Target:  5'- cUCCaagaUCCUGGAgGcggaGGCGGCGGAu- -3'
miRNA:   3'- -GGGaa--AGGACCUgUa---CCGCCGUCUcc -5'
27157 5' -55.4 NC_005832.1 + 7953 0.66 0.892229
Target:  5'- aCCCUg----GGGC-UGGCGGCggccaaaaAGAGGc -3'
miRNA:   3'- -GGGAaaggaCCUGuACCGCCG--------UCUCC- -5'
27157 5' -55.4 NC_005832.1 + 50424 0.66 0.890861
Target:  5'- gCUUgcgUCaaggugugcagGGACAcGGCGGCAGAGa -3'
miRNA:   3'- gGGAa--AGga---------CCUGUaCCGCCGUCUCc -5'
27157 5' -55.4 NC_005832.1 + 7252 0.66 0.878133
Target:  5'- aCCaCUUUgCCUGGAgGgagagGGUGGCA-AGGu -3'
miRNA:   3'- -GG-GAAA-GGACCUgUa----CCGCCGUcUCC- -5'
27157 5' -55.4 NC_005832.1 + 85628 0.66 0.870741
Target:  5'- cUCCUUUUCUuGACgAUGGCagguGCGGGGGc -3'
miRNA:   3'- -GGGAAAGGAcCUG-UACCGc---CGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 6523 0.66 0.870741
Target:  5'- gCCCUgugcggggCCagGGACA-GGgGGCAGGcGGu -3'
miRNA:   3'- -GGGAaa------GGa-CCUGUaCCgCCGUCU-CC- -5'
27157 5' -55.4 NC_005832.1 + 10020 0.66 0.868479
Target:  5'- aCaggUUCCUGGACcugagcagggaacaGUcGGCGGCGGAa- -3'
miRNA:   3'- gGga-AAGGACCUG--------------UA-CCGCCGUCUcc -5'
27157 5' -55.4 NC_005832.1 + 87436 0.67 0.847252
Target:  5'- -gCUggCCaUGGACccGGCGGCAaAGGc -3'
miRNA:   3'- ggGAaaGG-ACCUGuaCCGCCGUcUCC- -5'
27157 5' -55.4 NC_005832.1 + 18990 0.67 0.839007
Target:  5'- aCUCUUUUCaGGAUccucUGGCGGUuGGGGa -3'
miRNA:   3'- -GGGAAAGGaCCUGu---ACCGCCGuCUCC- -5'
27157 5' -55.4 NC_005832.1 + 54748 0.67 0.830566
Target:  5'- aCCgg-CCUGuGCcUGGCGGCGGAc- -3'
miRNA:   3'- gGGaaaGGACcUGuACCGCCGUCUcc -5'
27157 5' -55.4 NC_005832.1 + 28089 0.67 0.821938
Target:  5'- gCCCUUUgCCgUGGAgGUuGCGgGCGGAGa -3'
miRNA:   3'- -GGGAAA-GG-ACCUgUAcCGC-CGUCUCc -5'
27157 5' -55.4 NC_005832.1 + 28060 0.67 0.813129
Target:  5'- gCCCUgUCCagGGugGUGG-GGaccaAGAGGc -3'
miRNA:   3'- -GGGAaAGGa-CCugUACCgCCg---UCUCC- -5'
27157 5' -55.4 NC_005832.1 + 10861 0.67 0.813129
Target:  5'- aCCCgcgUC-GGGCcUGGCGGCcuuGAGGu -3'
miRNA:   3'- -GGGaaaGGaCCUGuACCGCCGu--CUCC- -5'
27157 5' -55.4 NC_005832.1 + 33196 0.68 0.79501
Target:  5'- uCCC--UCCaaacaGGACGUGaGCGGCGGAcacGGu -3'
miRNA:   3'- -GGGaaAGGa----CCUGUAC-CGCCGUCU---CC- -5'
27157 5' -55.4 NC_005832.1 + 12515 0.68 0.794087
Target:  5'- gUCCUgacugCCuccaagcacgacgUGGACggGGCGGCGGcGGa -3'
miRNA:   3'- -GGGAaa---GG-------------ACCUGuaCCGCCGUCuCC- -5'
27157 5' -55.4 NC_005832.1 + 49405 0.68 0.785716
Target:  5'- aCCCUUcCUUGGugGUGGCuGuGCAcGAGc -3'
miRNA:   3'- -GGGAAaGGACCugUACCG-C-CGU-CUCc -5'
27157 5' -55.4 NC_005832.1 + 96127 0.68 0.776278
Target:  5'- aCCC-UUCaaGGAgucCAUGG-GGCAGGGGu -3'
miRNA:   3'- -GGGaAAGgaCCU---GUACCgCCGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 67419 0.68 0.766706
Target:  5'- aCUCUUUCCcagagUGGGCcgcGGCGGCggcucaccucaAGAGGc -3'
miRNA:   3'- -GGGAAAGG-----ACCUGua-CCGCCG-----------UCUCC- -5'
27157 5' -55.4 NC_005832.1 + 50787 0.68 0.757009
Target:  5'- aCCUUUaaaaauugugagCgUGGACGUGG-GGguGAGGc -3'
miRNA:   3'- gGGAAA------------GgACCUGUACCgCCguCUCC- -5'
27157 5' -55.4 NC_005832.1 + 97024 0.68 0.757009
Target:  5'- uCCCagUCCU--ACGUGGUGGCGGAc- -3'
miRNA:   3'- -GGGaaAGGAccUGUACCGCCGUCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.