miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27157 5' -55.4 NC_005832.1 + 20086 1.14 0.001173
Target:  5'- aCCCUUUCCUGGACAUGGCGGCAGAGGg -3'
miRNA:   3'- -GGGAAAGGACCUGUACCGCCGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 31142 0.78 0.27635
Target:  5'- uCCCg-UCCUGaccGACGUGGCGGCuggaaGGAGGg -3'
miRNA:   3'- -GGGaaAGGAC---CUGUACCGCCG-----UCUCC- -5'
27157 5' -55.4 NC_005832.1 + 91430 0.77 0.303946
Target:  5'- gCCaag-CUGGACGUGGCcaGGCAGAGGa -3'
miRNA:   3'- gGGaaagGACCUGUACCG--CCGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 47728 0.72 0.582425
Target:  5'- gCUCUg-CCUgacGGGCAUGGCGGCcgcGAGGc -3'
miRNA:   3'- -GGGAaaGGA---CCUGUACCGCCGu--CUCC- -5'
27157 5' -55.4 NC_005832.1 + 29911 0.71 0.592791
Target:  5'- gCCUggUCUgGGGCGgcgggGGCGGCGGuGGa -3'
miRNA:   3'- gGGAa-AGGaCCUGUa----CCGCCGUCuCC- -5'
27157 5' -55.4 NC_005832.1 + 95013 0.71 0.624037
Target:  5'- aCCCacagcUCCUGGAaaaGGCcGCAGAGGu -3'
miRNA:   3'- -GGGaa---AGGACCUguaCCGcCGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 96503 0.7 0.686468
Target:  5'- gCCagggaCCUGGACucuGCGGUAGAGGc -3'
miRNA:   3'- -GGgaaa-GGACCUGuacCGCCGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 104155 0.69 0.707001
Target:  5'- aCCUUUCCgucuaGCAUGGauaGGaCAGAGGu -3'
miRNA:   3'- gGGAAAGGacc--UGUACCg--CC-GUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 97693 0.69 0.727271
Target:  5'- gCCUUUUCCgacggGGGCAUGGUGuCGGAc- -3'
miRNA:   3'- -GGGAAAGGa----CCUGUACCGCcGUCUcc -5'
27157 5' -55.4 NC_005832.1 + 36196 0.69 0.737282
Target:  5'- gCCCUggauaaagaCgcGGACGcGGCGGCAGAGa -3'
miRNA:   3'- -GGGAaag------Ga-CCUGUaCCGCCGUCUCc -5'
27157 5' -55.4 NC_005832.1 + 4995 0.69 0.747198
Target:  5'- aCUCUgaCgUGGACAgGGUccugGGCAGGGGa -3'
miRNA:   3'- -GGGAaaGgACCUGUaCCG----CCGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 97024 0.68 0.757009
Target:  5'- uCCCagUCCU--ACGUGGUGGCGGAc- -3'
miRNA:   3'- -GGGaaAGGAccUGUACCGCCGUCUcc -5'
27157 5' -55.4 NC_005832.1 + 89911 0.68 0.757009
Target:  5'- uCCCag-CCUGGcCAucucgggguUGGCggaaccGGCAGAGGg -3'
miRNA:   3'- -GGGaaaGGACCuGU---------ACCG------CCGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 9655 0.68 0.757009
Target:  5'- gCUggUCCUGGucCAucuUGGCGuaGCAGAGGu -3'
miRNA:   3'- gGGaaAGGACCu-GU---ACCGC--CGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 50787 0.68 0.757009
Target:  5'- aCCUUUaaaaauugugagCgUGGACGUGG-GGguGAGGc -3'
miRNA:   3'- gGGAAA------------GgACCUGUACCgCCguCUCC- -5'
27157 5' -55.4 NC_005832.1 + 67419 0.68 0.766706
Target:  5'- aCUCUUUCCcagagUGGGCcgcGGCGGCggcucaccucaAGAGGc -3'
miRNA:   3'- -GGGAAAGG-----ACCUGua-CCGCCG-----------UCUCC- -5'
27157 5' -55.4 NC_005832.1 + 96127 0.68 0.776278
Target:  5'- aCCC-UUCaaGGAgucCAUGG-GGCAGGGGu -3'
miRNA:   3'- -GGGaAAGgaCCU---GUACCgCCGUCUCC- -5'
27157 5' -55.4 NC_005832.1 + 49405 0.68 0.785716
Target:  5'- aCCCUUcCUUGGugGUGGCuGuGCAcGAGc -3'
miRNA:   3'- -GGGAAaGGACCugUACCG-C-CGU-CUCc -5'
27157 5' -55.4 NC_005832.1 + 12515 0.68 0.794087
Target:  5'- gUCCUgacugCCuccaagcacgacgUGGACggGGCGGCGGcGGa -3'
miRNA:   3'- -GGGAaa---GG-------------ACCUGuaCCGCCGUCuCC- -5'
27157 5' -55.4 NC_005832.1 + 33196 0.68 0.79501
Target:  5'- uCCC--UCCaaacaGGACGUGaGCGGCGGAcacGGu -3'
miRNA:   3'- -GGGaaAGGa----CCUGUAC-CGCCGUCU---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.