Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27157 | 5' | -55.4 | NC_005832.1 | + | 104155 | 0.69 | 0.707001 |
Target: 5'- aCCUUUCCgucuaGCAUGGauaGGaCAGAGGu -3' miRNA: 3'- gGGAAAGGacc--UGUACCg--CC-GUCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 97693 | 0.69 | 0.727271 |
Target: 5'- gCCUUUUCCgacggGGGCAUGGUGuCGGAc- -3' miRNA: 3'- -GGGAAAGGa----CCUGUACCGCcGUCUcc -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 97024 | 0.68 | 0.757009 |
Target: 5'- uCCCagUCCU--ACGUGGUGGCGGAc- -3' miRNA: 3'- -GGGaaAGGAccUGUACCGCCGUCUcc -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 96503 | 0.7 | 0.686468 |
Target: 5'- gCCagggaCCUGGACucuGCGGUAGAGGc -3' miRNA: 3'- -GGgaaa-GGACCUGuacCGCCGUCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 96127 | 0.68 | 0.776278 |
Target: 5'- aCCC-UUCaaGGAgucCAUGG-GGCAGGGGu -3' miRNA: 3'- -GGGaAAGgaCCU---GUACCgCCGUCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 95013 | 0.71 | 0.624037 |
Target: 5'- aCCCacagcUCCUGGAaaaGGCcGCAGAGGu -3' miRNA: 3'- -GGGaa---AGGACCUguaCCGcCGUCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 91430 | 0.77 | 0.303946 |
Target: 5'- gCCaag-CUGGACGUGGCcaGGCAGAGGa -3' miRNA: 3'- gGGaaagGACCUGUACCG--CCGUCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 89911 | 0.68 | 0.757009 |
Target: 5'- uCCCag-CCUGGcCAucucgggguUGGCggaaccGGCAGAGGg -3' miRNA: 3'- -GGGaaaGGACCuGU---------ACCG------CCGUCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 87436 | 0.67 | 0.847252 |
Target: 5'- -gCUggCCaUGGACccGGCGGCAaAGGc -3' miRNA: 3'- ggGAaaGG-ACCUGuaCCGCCGUcUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 85628 | 0.66 | 0.870741 |
Target: 5'- cUCCUUUUCUuGACgAUGGCagguGCGGGGGc -3' miRNA: 3'- -GGGAAAGGAcCUG-UACCGc---CGUCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 67419 | 0.68 | 0.766706 |
Target: 5'- aCUCUUUCCcagagUGGGCcgcGGCGGCggcucaccucaAGAGGc -3' miRNA: 3'- -GGGAAAGG-----ACCUGua-CCGCCG-----------UCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 54748 | 0.67 | 0.830566 |
Target: 5'- aCCgg-CCUGuGCcUGGCGGCGGAc- -3' miRNA: 3'- gGGaaaGGACcUGuACCGCCGUCUcc -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 50787 | 0.68 | 0.757009 |
Target: 5'- aCCUUUaaaaauugugagCgUGGACGUGG-GGguGAGGc -3' miRNA: 3'- gGGAAA------------GgACCUGUACCgCCguCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 50424 | 0.66 | 0.890861 |
Target: 5'- gCUUgcgUCaaggugugcagGGACAcGGCGGCAGAGa -3' miRNA: 3'- gGGAa--AGga---------CCUGUaCCGCCGUCUCc -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 49405 | 0.68 | 0.785716 |
Target: 5'- aCCCUUcCUUGGugGUGGCuGuGCAcGAGc -3' miRNA: 3'- -GGGAAaGGACCugUACCG-C-CGU-CUCc -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 47728 | 0.72 | 0.582425 |
Target: 5'- gCUCUg-CCUgacGGGCAUGGCGGCcgcGAGGc -3' miRNA: 3'- -GGGAaaGGA---CCUGUACCGCCGu--CUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 36196 | 0.69 | 0.737282 |
Target: 5'- gCCCUggauaaagaCgcGGACGcGGCGGCAGAGa -3' miRNA: 3'- -GGGAaag------Ga-CCUGUaCCGCCGUCUCc -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 33196 | 0.68 | 0.79501 |
Target: 5'- uCCC--UCCaaacaGGACGUGaGCGGCGGAcacGGu -3' miRNA: 3'- -GGGaaAGGa----CCUGUAC-CGCCGUCU---CC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 31142 | 0.78 | 0.27635 |
Target: 5'- uCCCg-UCCUGaccGACGUGGCGGCuggaaGGAGGg -3' miRNA: 3'- -GGGaaAGGAC---CUGUACCGCCG-----UCUCC- -5' |
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27157 | 5' | -55.4 | NC_005832.1 | + | 29911 | 0.71 | 0.592791 |
Target: 5'- gCCUggUCUgGGGCGgcgggGGCGGCGGuGGa -3' miRNA: 3'- gGGAa-AGGaCCUGUa----CCGCCGUCuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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