miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27158 3' -56.1 NC_005832.1 + 489 0.66 0.837402
Target:  5'- --cGUCCugg--UCGGGGCCCCUGUGg -3'
miRNA:   3'- ugaCAGGuagagGGUCCUGGGGAUAC- -5'
27158 3' -56.1 NC_005832.1 + 53958 0.66 0.828845
Target:  5'- --gGUuuGcCUCCCAGGACCCUg--- -3'
miRNA:   3'- ugaCAggUaGAGGGUCCUGGGGauac -5'
27158 3' -56.1 NC_005832.1 + 2287 0.66 0.802071
Target:  5'- uGCUGgCCGUCUCCaacgccguCAGGACCaugAUGg -3'
miRNA:   3'- -UGACaGGUAGAGG--------GUCCUGGggaUAC- -5'
27158 3' -56.1 NC_005832.1 + 66469 0.67 0.761205
Target:  5'- uGCUGUCCAagacggUCUUUaacaaccugagcuaCAGGACCCCUc-- -3'
miRNA:   3'- -UGACAGGU------AGAGG--------------GUCCUGGGGAuac -5'
27158 3' -56.1 NC_005832.1 + 96949 0.67 0.75432
Target:  5'- uGCUGUCU--UUCCCAGGAgCCUCU-UGa -3'
miRNA:   3'- -UGACAGGuaGAGGGUCCU-GGGGAuAC- -5'
27158 3' -56.1 NC_005832.1 + 42475 0.68 0.73435
Target:  5'- gACcGUCCugcacgaaccucGUCUCCCgaaaAGGACCCCa--- -3'
miRNA:   3'- -UGaCAGG------------UAGAGGG----UCCUGGGGauac -5'
27158 3' -56.1 NC_005832.1 + 93014 0.68 0.703715
Target:  5'- --aGUCCAUCuguccUCCCAGGAgcuuCCCCa--- -3'
miRNA:   3'- ugaCAGGUAG-----AGGGUCCU----GGGGauac -5'
27158 3' -56.1 NC_005832.1 + 41276 0.68 0.693362
Target:  5'- cACUGUCaccaaGUCUCCCGuGGACCUa---- -3'
miRNA:   3'- -UGACAGg----UAGAGGGU-CCUGGGgauac -5'
27158 3' -56.1 NC_005832.1 + 67461 0.69 0.672504
Target:  5'- gGCUGUggaaGUCUCCCGGG-UCCCUGc- -3'
miRNA:   3'- -UGACAgg--UAGAGGGUCCuGGGGAUac -5'
27158 3' -56.1 NC_005832.1 + 44947 0.69 0.651505
Target:  5'- cACUGcUCCAUCUCCCc-GAUCUUUAUGc -3'
miRNA:   3'- -UGAC-AGGUAGAGGGucCUGGGGAUAC- -5'
27158 3' -56.1 NC_005832.1 + 31371 0.7 0.577949
Target:  5'- cCUGUCUGUC-CCCAGGACguCCCUc-- -3'
miRNA:   3'- uGACAGGUAGaGGGUCCUG--GGGAuac -5'
27158 3' -56.1 NC_005832.1 + 40881 0.71 0.557186
Target:  5'- --gGUCCGUCUUuaCCAGGGCCCUg--- -3'
miRNA:   3'- ugaCAGGUAGAG--GGUCCUGGGGauac -5'
27158 3' -56.1 NC_005832.1 + 39623 0.72 0.476803
Target:  5'- cCUGcCCAcagcuccagggUCUCCCugAGGACCCCUGa- -3'
miRNA:   3'- uGACaGGU-----------AGAGGG--UCCUGGGGAUac -5'
27158 3' -56.1 NC_005832.1 + 20214 1.09 0.001773
Target:  5'- gACUGUCCAUCUCCCAGGACCCCUAUGg -3'
miRNA:   3'- -UGACAGGUAGAGGGUCCUGGGGAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.