miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27158 5' -53 NC_005832.1 + 49456 0.66 0.960361
Target:  5'- uCCCU-CAGGGcucguuguggUCCCAGuCGUagucGGCCa -3'
miRNA:   3'- -GGGAaGUCCU----------AGGGUCuGCGgu--UUGG- -5'
27158 5' -53 NC_005832.1 + 74999 0.66 0.960361
Target:  5'- cCCCguagaGGGAcCCCAGgu-CCGAGCCg -3'
miRNA:   3'- -GGGaag--UCCUaGGGUCugcGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 87117 0.66 0.960361
Target:  5'- gCCUcauggUCAGGG-CCUucuuuGACGCCuccGCCa -3'
miRNA:   3'- gGGA-----AGUCCUaGGGu----CUGCGGuu-UGG- -5'
27158 5' -53 NC_005832.1 + 37903 0.66 0.960361
Target:  5'- aCCUUUCaaacgagucuAGGGUCCCAGAgaUGUauuuACCa -3'
miRNA:   3'- -GGGAAG----------UCCUAGGGUCU--GCGguu-UGG- -5'
27158 5' -53 NC_005832.1 + 63775 0.66 0.960361
Target:  5'- --gUUCAGGAaacuugcCCCAGGCGCUGAAa- -3'
miRNA:   3'- gggAAGUCCUa------GGGUCUGCGGUUUgg -5'
27158 5' -53 NC_005832.1 + 56375 0.66 0.959246
Target:  5'- aCCgugaAGGGUCUuacuuucacagccgCGGugGCCAAGCUc -3'
miRNA:   3'- gGGaag-UCCUAGG--------------GUCugCGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 3814 0.66 0.959246
Target:  5'- -gCUUgAGGGccaUCCCAaccaggacgcacgcGcACGCCAGACCu -3'
miRNA:   3'- ggGAAgUCCU---AGGGU--------------C-UGCGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 11634 0.66 0.956562
Target:  5'- gUCCagCAGGGUgCCCucgucGACcuccccccgGCCGAGCCa -3'
miRNA:   3'- -GGGaaGUCCUA-GGGu----CUG---------CGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 36017 0.66 0.955773
Target:  5'- gCCCU-CAGGGccagagcUCCUacgcgugGGAUGCCAAgaucGCCc -3'
miRNA:   3'- -GGGAaGUCCU-------AGGG-------UCUGCGGUU----UGG- -5'
27158 5' -53 NC_005832.1 + 76041 0.66 0.952522
Target:  5'- cUCCUUggcCAGGGcCCUGGugGCCcuGACUg -3'
miRNA:   3'- -GGGAA---GUCCUaGGGUCugCGGu-UUGG- -5'
27158 5' -53 NC_005832.1 + 39532 0.66 0.952522
Target:  5'- aUCUUaAGGGUCCgGGAggaccCGCgGGACCa -3'
miRNA:   3'- gGGAAgUCCUAGGgUCU-----GCGgUUUGG- -5'
27158 5' -53 NC_005832.1 + 19954 0.66 0.952522
Target:  5'- gUCC-UCGGGGcaucuccagCCCGGACGUCAuGCa -3'
miRNA:   3'- -GGGaAGUCCUa--------GGGUCUGCGGUuUGg -5'
27158 5' -53 NC_005832.1 + 41805 0.66 0.948676
Target:  5'- aCCgUgAGGuacgagcccccgugCCCAGACGgCAAACCc -3'
miRNA:   3'- gGGaAgUCCua------------GGGUCUGCgGUUUGG- -5'
27158 5' -53 NC_005832.1 + 89491 0.66 0.948236
Target:  5'- gCCUUCAGGGa-CUGGACGUcugCAAACUc -3'
miRNA:   3'- gGGAAGUCCUagGGUCUGCG---GUUUGG- -5'
27158 5' -53 NC_005832.1 + 73022 0.66 0.948236
Target:  5'- aCCgUCAGGA-CCCuuuGCGCCcgugGGACCc -3'
miRNA:   3'- gGGaAGUCCUaGGGuc-UGCGG----UUUGG- -5'
27158 5' -53 NC_005832.1 + 1953 0.66 0.948236
Target:  5'- gCCgaCAGacuUUCCAGACGCC--GCCg -3'
miRNA:   3'- gGGaaGUCcu-AGGGUCUGCGGuuUGG- -5'
27158 5' -53 NC_005832.1 + 65198 0.66 0.948236
Target:  5'- gCCCgguaaaCAGGAggaCGGACGUCAuGCCc -3'
miRNA:   3'- -GGGaa----GUCCUaggGUCUGCGGUuUGG- -5'
27158 5' -53 NC_005832.1 + 78831 0.66 0.948236
Target:  5'- aCCUucgacgugcUCAGGGUUCCAGgcACGUUccACCg -3'
miRNA:   3'- gGGA---------AGUCCUAGGGUC--UGCGGuuUGG- -5'
27158 5' -53 NC_005832.1 + 102213 0.66 0.948236
Target:  5'- uUCUUgAGGAUCCCucuugcGACcCCGAgGCCg -3'
miRNA:   3'- gGGAAgUCCUAGGGu-----CUGcGGUU-UGG- -5'
27158 5' -53 NC_005832.1 + 18825 0.66 0.948236
Target:  5'- aCCCUcUCGGGcUCCUcaaAGACGUCuucguccccAACCg -3'
miRNA:   3'- -GGGA-AGUCCuAGGG---UCUGCGGu--------UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.