miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27158 5' -53 NC_005832.1 + 5630 0.69 0.868853
Target:  5'- cCCCUgggCAGGGUgaccagaCCCucguacGACGCCcgGGACCc -3'
miRNA:   3'- -GGGAa--GUCCUA-------GGGu-----CUGCGG--UUUGG- -5'
27158 5' -53 NC_005832.1 + 50771 0.72 0.723575
Target:  5'- uCCCUugUCGccccuGGGUCCCAcGCGCCuGACUg -3'
miRNA:   3'- -GGGA--AGU-----CCUAGGGUcUGCGGuUUGG- -5'
27158 5' -53 NC_005832.1 + 39733 0.71 0.733755
Target:  5'- gUCCggCAGG-UCCCAGGgGuCCAGACg -3'
miRNA:   3'- -GGGaaGUCCuAGGGUCUgC-GGUUUGg -5'
27158 5' -53 NC_005832.1 + 7421 0.71 0.763689
Target:  5'- gCCCUUCGGGGagcUCCUGGGCcucaGUCAgaAACCc -3'
miRNA:   3'- -GGGAAGUCCU---AGGGUCUG----CGGU--UUGG- -5'
27158 5' -53 NC_005832.1 + 68271 0.7 0.782082
Target:  5'- cCCCgugugCAGGuaccacggauuccGUCCCAGggaccuggugcACGUCAAGCCa -3'
miRNA:   3'- -GGGaa---GUCC-------------UAGGGUC-----------UGCGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 98042 0.7 0.783037
Target:  5'- uCCCga-AGG-UCCuCAGGCgucgGCCAGACCg -3'
miRNA:   3'- -GGGaagUCCuAGG-GUCUG----CGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 48166 0.7 0.792499
Target:  5'- gCCUUgacCAGGAcgucugaggccUUUCGGGCGUCGAACCa -3'
miRNA:   3'- gGGAA---GUCCU-----------AGGGUCUGCGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 50538 0.7 0.81814
Target:  5'- gUCCgUCAGGAUCCUcucgcccgccuuGACGCCGcugagacugGACCc -3'
miRNA:   3'- -GGGaAGUCCUAGGGu-----------CUGCGGU---------UUGG- -5'
27158 5' -53 NC_005832.1 + 88153 0.69 0.853889
Target:  5'- aCCCUggcCAGGcUCCUGGACcuuCCAGACa -3'
miRNA:   3'- -GGGAa--GUCCuAGGGUCUGc--GGUUUGg -5'
27158 5' -53 NC_005832.1 + 88731 0.72 0.723575
Target:  5'- gUUUUCAGGucuaacucucAUCCUAGGCGCUAGcuGCCa -3'
miRNA:   3'- gGGAAGUCC----------UAGGGUCUGCGGUU--UGG- -5'
27158 5' -53 NC_005832.1 + 53815 0.72 0.713311
Target:  5'- cCCCUUCgccugggguuccAGGGUCCUGGGaGgCAAACCa -3'
miRNA:   3'- -GGGAAG------------UCCUAGGGUCUgCgGUUUGG- -5'
27158 5' -53 NC_005832.1 + 52914 0.72 0.713311
Target:  5'- gCCC-UCAGGAUCCUgccGGCGaCCAucucuaGGCCg -3'
miRNA:   3'- -GGGaAGUCCUAGGGu--CUGC-GGU------UUGG- -5'
27158 5' -53 NC_005832.1 + 55160 0.8 0.297001
Target:  5'- aCCCUcaGGGAUCCCagggccacagaGGugGCCAAACUg -3'
miRNA:   3'- -GGGAagUCCUAGGG-----------UCugCGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 20998 0.78 0.374902
Target:  5'- gUCCUcCAGGAUCCCAGcuccCGCC-GGCCu -3'
miRNA:   3'- -GGGAaGUCCUAGGGUCu---GCGGuUUGG- -5'
27158 5' -53 NC_005832.1 + 32266 0.76 0.455929
Target:  5'- gCCUUUAGGGcCCCGGA-GCCAGucGCCa -3'
miRNA:   3'- gGGAAGUCCUaGGGUCUgCGGUU--UGG- -5'
27158 5' -53 NC_005832.1 + 76014 0.76 0.475189
Target:  5'- gCCCUccugcUCGGGAcaucUCCUAG-CGUCGAGCCa -3'
miRNA:   3'- -GGGA-----AGUCCU----AGGGUCuGCGGUUUGG- -5'
27158 5' -53 NC_005832.1 + 77131 0.73 0.639949
Target:  5'- -gCUUUGGcGUCCCAGACGCC-AGCUg -3'
miRNA:   3'- ggGAAGUCcUAGGGUCUGCGGuUUGG- -5'
27158 5' -53 NC_005832.1 + 72580 0.73 0.639949
Target:  5'- cCCCUgggcuUCAGGGUCCC-GACGUCGuagugGACg -3'
miRNA:   3'- -GGGA-----AGUCCUAGGGuCUGCGGU-----UUGg -5'
27158 5' -53 NC_005832.1 + 32685 0.73 0.661082
Target:  5'- uCCCUUCAGGcccgagaCCAGGCaCCAcGACCg -3'
miRNA:   3'- -GGGAAGUCCuag----GGUCUGcGGU-UUGG- -5'
27158 5' -53 NC_005832.1 + 25637 0.72 0.682116
Target:  5'- gUCUUUAGGGUUCCAGGCGCacacgauGAugCa -3'
miRNA:   3'- gGGAAGUCCUAGGGUCUGCGg------UUugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.