Results 41 - 60 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 96597 | 0.68 | 0.65254 |
Target: 5'- -aGGCUCUUGagaaCCGCCUUGGA-GUCGCa -3' miRNA: 3'- cgCCGGGAGC----GGUGGAAUUUcCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 36129 | 0.68 | 0.651508 |
Target: 5'- -aGGCCCUcuaggcacuacaaCGCC-CC----GGGCCGCu -3' miRNA: 3'- cgCCGGGA-------------GCGGuGGaauuUCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 11935 | 0.68 | 0.642219 |
Target: 5'- cCGGCCagaGCCAgggcaccuucacCCUUGAAGGCgaGCa -3' miRNA: 3'- cGCCGGgagCGGU------------GGAAUUUCCGg-CG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 14161 | 0.68 | 0.65254 |
Target: 5'- uCGGUCUUgGCCGgUUUGAcGGCUGCc -3' miRNA: 3'- cGCCGGGAgCGGUgGAAUUuCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 40896 | 0.68 | 0.646349 |
Target: 5'- -gGGCCCU-GCCaaaggaggggacccgACCgggUAAGcGGCCGCu -3' miRNA: 3'- cgCCGGGAgCGG---------------UGGa--AUUU-CCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 56780 | 0.68 | 0.621561 |
Target: 5'- cGCGGCCUgCGCCugCU---GGGCg-- -3' miRNA: 3'- -CGCCGGGaGCGGugGAauuUCCGgcg -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 2267 | 0.69 | 0.580404 |
Target: 5'- -aGGgCCUCGCCGaauaUGGGGGCCaGCa -3' miRNA: 3'- cgCCgGGAGCGGUgga-AUUUCCGG-CG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 53057 | 0.69 | 0.589628 |
Target: 5'- uGCGGCCUagagauggUCGCCGgcaggauCC-UGAGGGCCa- -3' miRNA: 3'- -CGCCGGG--------AGCGGU-------GGaAUUUCCGGcg -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 11817 | 0.69 | 0.560023 |
Target: 5'- cUGGCUCUgGCCGggcuCCUcgUGAuGGCCGCc -3' miRNA: 3'- cGCCGGGAgCGGU----GGA--AUUuCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 102370 | 0.69 | 0.549906 |
Target: 5'- gGCGGUCgUaGCCAU---GGAGGCCGCc -3' miRNA: 3'- -CGCCGGgAgCGGUGgaaUUUCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 42285 | 0.69 | 0.549906 |
Target: 5'- -aGGCCCUUGgaaaaaCugCgagGGAGGCCGUg -3' miRNA: 3'- cgCCGGGAGCg-----GugGaa-UUUCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 102077 | 0.69 | 0.570191 |
Target: 5'- aCGGUaacaC-CGuCCGCCaUGGAGGCCGCc -3' miRNA: 3'- cGCCGg---GaGC-GGUGGaAUUUCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 94986 | 0.69 | 0.560023 |
Target: 5'- -aGGUCacaaagUGCUACCUccaggcuaUGGAGGCCGCa -3' miRNA: 3'- cgCCGGga----GCGGUGGA--------AUUUCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 72843 | 0.69 | 0.570191 |
Target: 5'- aCGGCCCguccgCGCC-CCUaucuccggGAGGGCCu- -3' miRNA: 3'- cGCCGGGa----GCGGuGGAa-------UUUCCGGcg -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 40950 | 0.69 | 0.570191 |
Target: 5'- cGCGGCUCcagCGCUGCCccugauAAGGCCa- -3' miRNA: 3'- -CGCCGGGa--GCGGUGGaau---UUCCGGcg -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 36808 | 0.69 | 0.580404 |
Target: 5'- cGCGGCuCCUacCGCCGCCUccuucAAGGUCc- -3' miRNA: 3'- -CGCCG-GGA--GCGGUGGAau---UUCCGGcg -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 7295 | 0.69 | 0.590655 |
Target: 5'- gGCGGUCCU-GUguCCgggAGAGGCUGUg -3' miRNA: 3'- -CGCCGGGAgCGguGGaa-UUUCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 8275 | 0.7 | 0.523883 |
Target: 5'- cCGGCUCcCGUCAggauaucuagggacuCCUcGAAGGCCGCc -3' miRNA: 3'- cGCCGGGaGCGGU---------------GGAaUUUCCGGCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 20854 | 0.7 | 0.490599 |
Target: 5'- aCGGCUCUaGCCACCgugUAcgccAGGGCgGCc -3' miRNA: 3'- cGCCGGGAgCGGUGGa--AU----UUCCGgCG- -5' |
|||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 96153 | 0.7 | 0.539846 |
Target: 5'- gGUGGCacaUUGCCACCagGGuGGCCGUc -3' miRNA: 3'- -CGCCGgg-AGCGGUGGaaUUuCCGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home