miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 96153 0.7 0.539846
Target:  5'- gGUGGCacaUUGCCACCagGGuGGCCGUc -3'
miRNA:   3'- -CGCCGgg-AGCGGUGGaaUUuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 20854 0.7 0.490599
Target:  5'- aCGGCUCUaGCCACCgugUAcgccAGGGCgGCc -3'
miRNA:   3'- cGCCGGGAgCGGUGGa--AU----UUCCGgCG- -5'
27162 3' -57.9 NC_005832.1 + 8275 0.7 0.523883
Target:  5'- cCGGCUCcCGUCAggauaucuagggacuCCUcGAAGGCCGCc -3'
miRNA:   3'- cGCCGGGaGCGGU---------------GGAaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 104098 0.7 0.510066
Target:  5'- gGCGGCCCUCaggGCCACCaucuccucGGGagcuuCGCa -3'
miRNA:   3'- -CGCCGGGAG---CGGUGGaauu----UCCg----GCG- -5'
27162 3' -57.9 NC_005832.1 + 102370 0.69 0.549906
Target:  5'- gGCGGUCgUaGCCAU---GGAGGCCGCc -3'
miRNA:   3'- -CGCCGGgAgCGGUGgaaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 7295 0.69 0.590655
Target:  5'- gGCGGUCCU-GUguCCgggAGAGGCUGUg -3'
miRNA:   3'- -CGCCGGGAgCGguGGaa-UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 36808 0.69 0.580404
Target:  5'- cGCGGCuCCUacCGCCGCCUccuucAAGGUCc- -3'
miRNA:   3'- -CGCCG-GGA--GCGGUGGAau---UUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 42285 0.69 0.549906
Target:  5'- -aGGCCCUUGgaaaaaCugCgagGGAGGCCGUg -3'
miRNA:   3'- cgCCGGGAGCg-----GugGaa-UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 11817 0.69 0.560023
Target:  5'- cUGGCUCUgGCCGggcuCCUcgUGAuGGCCGCc -3'
miRNA:   3'- cGCCGGGAgCGGU----GGA--AUUuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 102077 0.69 0.570191
Target:  5'- aCGGUaacaC-CGuCCGCCaUGGAGGCCGCc -3'
miRNA:   3'- cGCCGg---GaGC-GGUGGaAUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 40950 0.69 0.570191
Target:  5'- cGCGGCUCcagCGCUGCCccugauAAGGCCa- -3'
miRNA:   3'- -CGCCGGGa--GCGGUGGaau---UUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 2267 0.69 0.580404
Target:  5'- -aGGgCCUCGCCGaauaUGGGGGCCaGCa -3'
miRNA:   3'- cgCCgGGAGCGGUgga-AUUUCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 72843 0.69 0.570191
Target:  5'- aCGGCCCguccgCGCC-CCUaucuccggGAGGGCCu- -3'
miRNA:   3'- cGCCGGGa----GCGGuGGAa-------UUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 94986 0.69 0.560023
Target:  5'- -aGGUCacaaagUGCUACCUccaggcuaUGGAGGCCGCa -3'
miRNA:   3'- cgCCGGga----GCGGUGGA--------AUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 53057 0.69 0.589628
Target:  5'- uGCGGCCUagagauggUCGCCGgcaggauCC-UGAGGGCCa- -3'
miRNA:   3'- -CGCCGGG--------AGCGGU-------GGaAUUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 56780 0.68 0.621561
Target:  5'- cGCGGCCUgCGCCugCU---GGGCg-- -3'
miRNA:   3'- -CGCCGGGaGCGGugGAauuUCCGgcg -5'
27162 3' -57.9 NC_005832.1 + 40896 0.68 0.646349
Target:  5'- -gGGCCCU-GCCaaaggaggggacccgACCgggUAAGcGGCCGCu -3'
miRNA:   3'- cgCCGGGAgCGG---------------UGGa--AUUU-CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 14161 0.68 0.65254
Target:  5'- uCGGUCUUgGCCGgUUUGAcGGCUGCc -3'
miRNA:   3'- cGCCGGGAgCGGUgGAAUUuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 68333 0.68 0.611241
Target:  5'- gGUaGCCCUCGUCACC----AGGCCu- -3'
miRNA:   3'- -CGcCGGGAGCGGUGGaauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 26645 0.68 0.611241
Target:  5'- -aGGUCUUUuCCAUCaaGAGGGCCGCa -3'
miRNA:   3'- cgCCGGGAGcGGUGGaaUUUCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.