miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 4759 0.68 0.620528
Target:  5'- uCGGCCCcCGCCGaucccauCCU--GGGGUCGUa -3'
miRNA:   3'- cGCCGGGaGCGGU-------GGAauUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 96597 0.68 0.65254
Target:  5'- -aGGCUCUUGagaaCCGCCUUGGA-GUCGCa -3'
miRNA:   3'- cgCCGGGAGC----GGUGGAAUUUcCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 36129 0.68 0.651508
Target:  5'- -aGGCCCUcuaggcacuacaaCGCC-CC----GGGCCGCu -3'
miRNA:   3'- cgCCGGGA-------------GCGGuGGaauuUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 38070 0.68 0.621561
Target:  5'- aCGGCCCUgGCaCGCCUgggauguAAGGCaucacaGUg -3'
miRNA:   3'- cGCCGGGAgCG-GUGGAau-----UUCCGg-----CG- -5'
27162 3' -57.9 NC_005832.1 + 11935 0.68 0.642219
Target:  5'- cCGGCCagaGCCAgggcaccuucacCCUUGAAGGCgaGCa -3'
miRNA:   3'- cGCCGGgagCGGU------------GGAAUUUCCGg-CG- -5'
27162 3' -57.9 NC_005832.1 + 40896 0.68 0.646349
Target:  5'- -gGGCCCU-GCCaaaggaggggacccgACCgggUAAGcGGCCGCu -3'
miRNA:   3'- cgCCGGGAgCGG---------------UGGa--AUUU-CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 20027 0.67 0.683368
Target:  5'- gGCGGCggacgcgaugCUgugCGCCACCaucaUGAGGGCCa- -3'
miRNA:   3'- -CGCCG----------GGa--GCGGUGGa---AUUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 87304 0.67 0.673123
Target:  5'- aGCcGCCgUCGCCAUCcccGAGGCCcCa -3'
miRNA:   3'- -CGcCGGgAGCGGUGGaauUUCCGGcG- -5'
27162 3' -57.9 NC_005832.1 + 28087 0.67 0.713808
Target:  5'- -aGGCCCuUUGCCG---UGGAGGuuGCg -3'
miRNA:   3'- cgCCGGG-AGCGGUggaAUUUCCggCG- -5'
27162 3' -57.9 NC_005832.1 + 76030 0.67 0.683368
Target:  5'- -gGGCCCUgGUgGCCcUGAcuGCUGCa -3'
miRNA:   3'- cgCCGGGAgCGgUGGaAUUucCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 95588 0.67 0.683368
Target:  5'- -gGGCCCUCGagagggagugCGCCgacuacgGGAGGCUGUc -3'
miRNA:   3'- cgCCGGGAGCg---------GUGGaa-----UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 77626 0.67 0.69357
Target:  5'- uUGGCCuCUgGUUggACUUUuGGGGCCGCg -3'
miRNA:   3'- cGCCGG-GAgCGG--UGGAAuUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 54490 0.67 0.70372
Target:  5'- uGCuGUCCUCcCCGCCgaaAAAGGCCcccaGCg -3'
miRNA:   3'- -CGcCGGGAGcGGUGGaa-UUUCCGG----CG- -5'
27162 3' -57.9 NC_005832.1 + 50545 0.67 0.713808
Target:  5'- -aGGaucCUCUCGcCCGCCUUGAc-GCCGCu -3'
miRNA:   3'- cgCC---GGGAGC-GGUGGAAUUucCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 54292 0.67 0.713808
Target:  5'- -aGGCCCUC-UCACCUgcuGGGUCugaGCg -3'
miRNA:   3'- cgCCGGGAGcGGUGGAauuUCCGG---CG- -5'
27162 3' -57.9 NC_005832.1 + 98595 0.67 0.70372
Target:  5'- aCGGCCCUgUGCCuGCCUaucauGGGagaCGCg -3'
miRNA:   3'- cGCCGGGA-GCGG-UGGAauu--UCCg--GCG- -5'
27162 3' -57.9 NC_005832.1 + 20683 0.67 0.697637
Target:  5'- -gGGCCCU-GCCuuCCggAucgggagcagaguacGAGGCCGCc -3'
miRNA:   3'- cgCCGGGAgCGGu-GGaaU---------------UUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 81275 0.67 0.683368
Target:  5'- uGCGGCUUUCGCaGCCcucacuuGGGCCa- -3'
miRNA:   3'- -CGCCGGGAGCGgUGGaauu---UCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 71631 0.67 0.683368
Target:  5'- aGCGGCgC-CGCCGCCUaccagucuUGGuGGCCu- -3'
miRNA:   3'- -CGCCGgGaGCGGUGGA--------AUUuCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 97088 0.67 0.683368
Target:  5'- -aGGCCCUgucgaccucagaCGCC-CUggAGcAGGCCGCc -3'
miRNA:   3'- cgCCGGGA------------GCGGuGGaaUU-UCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.