miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 80039 0.67 0.711796
Target:  5'- cGCaGGCCCccaUCGCCGaaggguCCgaggccauGGCCGCc -3'
miRNA:   3'- -CG-CCGGG---AGCGGU------GGaauuu---CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 79791 0.66 0.733762
Target:  5'- cUGGCCUcCGCCuuGCCaguggUGuAGGCCGUc -3'
miRNA:   3'- cGCCGGGaGCGG--UGGa----AUuUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 79012 0.67 0.723825
Target:  5'- -aGGCUcagggaCUCuGCCACCcu---GGCCGCa -3'
miRNA:   3'- cgCCGG------GAG-CGGUGGaauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 78577 0.71 0.480995
Target:  5'- uCGGUCgC-CGCCGCCUUuGAGGCaUGCu -3'
miRNA:   3'- cGCCGG-GaGCGGUGGAAuUUCCG-GCG- -5'
27162 3' -57.9 NC_005832.1 + 78317 0.66 0.753357
Target:  5'- uGUGGCCaCUCaCCGCCacAGGGGCaugaugggguuCGCg -3'
miRNA:   3'- -CGCCGG-GAGcGGUGGaaUUUCCG-----------GCG- -5'
27162 3' -57.9 NC_005832.1 + 77626 0.67 0.69357
Target:  5'- uUGGCCuCUgGUUggACUUUuGGGGCCGCg -3'
miRNA:   3'- cGCCGG-GAgCGG--UGGAAuUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 76030 0.67 0.683368
Target:  5'- -gGGCCCUgGUgGCCcUGAcuGCUGCa -3'
miRNA:   3'- cgCCGGGAgCGgUGGaAUUucCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 72843 0.69 0.570191
Target:  5'- aCGGCCCguccgCGCC-CCUaucuccggGAGGGCCu- -3'
miRNA:   3'- cGCCGGGa----GCGGuGGAa-------UUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 72423 0.72 0.416556
Target:  5'- uGCGGCCCcuggUCGCC-CCU---GGGCCc- -3'
miRNA:   3'- -CGCCGGG----AGCGGuGGAauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 71631 0.67 0.683368
Target:  5'- aGCGGCgC-CGCCGCCUaccagucuUGGuGGCCu- -3'
miRNA:   3'- -CGCCGgGaGCGGUGGA--------AUUuCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 68333 0.68 0.611241
Target:  5'- gGUaGCCCUCGUCACC----AGGCCu- -3'
miRNA:   3'- -CGcCGGGAGCGGUGGaauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 67163 0.85 0.061776
Target:  5'- cGCGGCCCUCGCCAC------GGCCGCc -3'
miRNA:   3'- -CGCCGGGAGCGGUGgaauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 67026 0.73 0.34975
Target:  5'- -gGGCCCUggcgGCgGCCguggcGAGGGCCGCg -3'
miRNA:   3'- cgCCGGGAg---CGgUGGaa---UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 65561 0.66 0.733762
Target:  5'- cGCcuGCCCUUGCCguagACCUgcggguAAGGCCu- -3'
miRNA:   3'- -CGc-CGGGAGCGG----UGGAau----UUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 56952 0.66 0.762996
Target:  5'- -aGGCCgUCGCCACUc-AGAGcGCC-Ca -3'
miRNA:   3'- cgCCGGgAGCGGUGGaaUUUC-CGGcG- -5'
27162 3' -57.9 NC_005832.1 + 56780 0.68 0.621561
Target:  5'- cGCGGCCUgCGCCugCU---GGGCg-- -3'
miRNA:   3'- -CGCCGGGaGCGGugGAauuUCCGgcg -5'
27162 3' -57.9 NC_005832.1 + 56459 0.68 0.642219
Target:  5'- aGUGGCCCUgGgCUACgUccccAGGCCGUc -3'
miRNA:   3'- -CGCCGGGAgC-GGUGgAauu-UCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 56015 0.73 0.355282
Target:  5'- cGCGGCCCUgggucuUGCCcccggaucucccuuGCCcuggUAGAGGCCGg -3'
miRNA:   3'- -CGCCGGGA------GCGG--------------UGGa---AUUUCCGGCg -5'
27162 3' -57.9 NC_005832.1 + 54490 0.67 0.70372
Target:  5'- uGCuGUCCUCcCCGCCgaaAAAGGCCcccaGCg -3'
miRNA:   3'- -CGcCGGGAGcGGUGGaa-UUUCCGG----CG- -5'
27162 3' -57.9 NC_005832.1 + 54292 0.67 0.713808
Target:  5'- -aGGCCCUC-UCACCUgcuGGGUCugaGCg -3'
miRNA:   3'- cgCCGGGAGcGGUGGAauuUCCGG---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.