miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 38070 0.68 0.621561
Target:  5'- aCGGCCCUgGCaCGCCUgggauguAAGGCaucacaGUg -3'
miRNA:   3'- cGCCGGGAgCG-GUGGAau-----UUCCGg-----CG- -5'
27162 3' -57.9 NC_005832.1 + 4759 0.68 0.620528
Target:  5'- uCGGCCCcCGCCGaucccauCCU--GGGGUCGUa -3'
miRNA:   3'- cGCCGGGaGCGGU-------GGAauUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 8275 0.7 0.523883
Target:  5'- cCGGCUCcCGUCAggauaucuagggacuCCUcGAAGGCCGCc -3'
miRNA:   3'- cGCCGGGaGCGGU---------------GGAaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 26611 0.73 0.373888
Target:  5'- cGCGGCCUUUaagguggcgaggGCCGCCgggu-GGCUGCc -3'
miRNA:   3'- -CGCCGGGAG------------CGGUGGaauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 80039 0.67 0.711796
Target:  5'- cGCaGGCCCccaUCGCCGaaggguCCgaggccauGGCCGCc -3'
miRNA:   3'- -CG-CCGGG---AGCGGU------GGaauuu---CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 76030 0.67 0.683368
Target:  5'- -gGGCCCUgGUgGCCcUGAcuGCUGCa -3'
miRNA:   3'- cgCCGGGAgCGgUGGaAUUucCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 26645 0.68 0.611241
Target:  5'- -aGGUCUUUuCCAUCaaGAGGGCCGCa -3'
miRNA:   3'- cgCCGGGAGcGGUGGaaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 83393 0.73 0.365718
Target:  5'- uUGGCCC-CGCCACCUcAAGGGUa-- -3'
miRNA:   3'- cGCCGGGaGCGGUGGAaUUUCCGgcg -5'
27162 3' -57.9 NC_005832.1 + 96597 0.68 0.65254
Target:  5'- -aGGCUCUUGagaaCCGCCUUGGA-GUCGCa -3'
miRNA:   3'- cgCCGGGAGC----GGUGGAAUUUcCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 94897 0.74 0.297839
Target:  5'- uCGGCCCUCGCgCAgauCCUccuGGGCCuGCa -3'
miRNA:   3'- cGCCGGGAGCG-GU---GGAauuUCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 68333 0.68 0.611241
Target:  5'- gGUaGCCCUCGUCACC----AGGCCu- -3'
miRNA:   3'- -CGcCGGGAGCGGUGGaauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 56459 0.68 0.642219
Target:  5'- aGUGGCCCUgGgCUACgUccccAGGCCGUc -3'
miRNA:   3'- -CGCCGGGAgC-GGUGgAauu-UCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 53057 0.69 0.589628
Target:  5'- uGCGGCCUagagauggUCGCCGgcaggauCC-UGAGGGCCa- -3'
miRNA:   3'- -CGCCGGG--------AGCGGU-------GGaAUUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 94986 0.69 0.560023
Target:  5'- -aGGUCacaaagUGCUACCUccaggcuaUGGAGGCCGCa -3'
miRNA:   3'- cgCCGGga----GCGGUGGA--------AUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 1031 0.71 0.480995
Target:  5'- cCGGCCCcUGCUacGCCg--GGGGCUGCa -3'
miRNA:   3'- cGCCGGGaGCGG--UGGaauUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 28066 0.73 0.382182
Target:  5'- gGCGGgacCCUUUGCCACCUUGAccaCCGCg -3'
miRNA:   3'- -CGCC---GGGAGCGGUGGAAUUuccGGCG- -5'
27162 3' -57.9 NC_005832.1 + 65561 0.66 0.733762
Target:  5'- cGCcuGCCCUUGCCguagACCUgcggguAAGGCCu- -3'
miRNA:   3'- -CGc-CGGGAGCGG----UGGAau----UUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 32294 0.67 0.713808
Target:  5'- cGUGGacucCCCUCGCCGCUccuccGGCCa- -3'
miRNA:   3'- -CGCC----GGGAGCGGUGGaauuuCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 11702 0.67 0.70372
Target:  5'- uCGGaCgUCGCCAUgagGAGGGCCGUc -3'
miRNA:   3'- cGCCgGgAGCGGUGgaaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 95588 0.67 0.683368
Target:  5'- -gGGCCCUCGagagggagugCGCCgacuacgGGAGGCUGUc -3'
miRNA:   3'- cgCCGGGAGCg---------GUGGaa-----UUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.