Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27162 | 3' | -57.9 | NC_005832.1 | + | 80039 | 0.67 | 0.711796 |
Target: 5'- cGCaGGCCCccaUCGCCGaaggguCCgaggccauGGCCGCc -3' miRNA: 3'- -CG-CCGGG---AGCGGU------GGaauuu---CCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 52839 | 0.67 | 0.70372 |
Target: 5'- gGCGGCCgC-CGCCGCUcacucugUGGGGGUgGUc -3' miRNA: 3'- -CGCCGG-GaGCGGUGGa------AUUUCCGgCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 54490 | 0.67 | 0.70372 |
Target: 5'- uGCuGUCCUCcCCGCCgaaAAAGGCCcccaGCg -3' miRNA: 3'- -CGcCGGGAGcGGUGGaa-UUUCCGG----CG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 98595 | 0.67 | 0.70372 |
Target: 5'- aCGGCCCUgUGCCuGCCUaucauGGGagaCGCg -3' miRNA: 3'- cGCCGGGA-GCGG-UGGAauu--UCCg--GCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 2796 | 0.67 | 0.70372 |
Target: 5'- -gGGUCCUCGCCAUaguccacAGGCCc- -3' miRNA: 3'- cgCCGGGAGCGGUGgaauu--UCCGGcg -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 11702 | 0.67 | 0.70372 |
Target: 5'- uCGGaCgUCGCCAUgagGAGGGCCGUc -3' miRNA: 3'- cGCCgGgAGCGGUGgaaUUUCCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 20683 | 0.67 | 0.697637 |
Target: 5'- -gGGCCCU-GCCuuCCggAucgggagcagaguacGAGGCCGCc -3' miRNA: 3'- cgCCGGGAgCGGu-GGaaU---------------UUCCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 77626 | 0.67 | 0.69357 |
Target: 5'- uUGGCCuCUgGUUggACUUUuGGGGCCGCg -3' miRNA: 3'- cGCCGG-GAgCGG--UGGAAuUUCCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 97088 | 0.67 | 0.683368 |
Target: 5'- -aGGCCCUgucgaccucagaCGCC-CUggAGcAGGCCGCc -3' miRNA: 3'- cgCCGGGA------------GCGGuGGaaUU-UCCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 95588 | 0.67 | 0.683368 |
Target: 5'- -gGGCCCUCGagagggagugCGCCgacuacgGGAGGCUGUc -3' miRNA: 3'- cgCCGGGAGCg---------GUGGaa-----UUUCCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 76030 | 0.67 | 0.683368 |
Target: 5'- -gGGCCCUgGUgGCCcUGAcuGCUGCa -3' miRNA: 3'- cgCCGGGAgCGgUGGaAUUucCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 20027 | 0.67 | 0.683368 |
Target: 5'- gGCGGCggacgcgaugCUgugCGCCACCaucaUGAGGGCCa- -3' miRNA: 3'- -CGCCG----------GGa--GCGGUGGa---AUUUCCGGcg -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 71631 | 0.67 | 0.683368 |
Target: 5'- aGCGGCgC-CGCCGCCUaccagucuUGGuGGCCu- -3' miRNA: 3'- -CGCCGgGaGCGGUGGA--------AUUuCCGGcg -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 81275 | 0.67 | 0.683368 |
Target: 5'- uGCGGCUUUCGCaGCCcucacuuGGGCCa- -3' miRNA: 3'- -CGCCGGGAGCGgUGGaauu---UCCGGcg -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 87304 | 0.67 | 0.673123 |
Target: 5'- aGCcGCCgUCGCCAUCcccGAGGCCcCa -3' miRNA: 3'- -CGcCGGgAGCGGUGGaauUUCCGGcG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 14161 | 0.68 | 0.65254 |
Target: 5'- uCGGUCUUgGCCGgUUUGAcGGCUGCc -3' miRNA: 3'- cGCCGGGAgCGGUgGAAUUuCCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 96597 | 0.68 | 0.65254 |
Target: 5'- -aGGCUCUUGagaaCCGCCUUGGA-GUCGCa -3' miRNA: 3'- cgCCGGGAGC----GGUGGAAUUUcCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 36129 | 0.68 | 0.651508 |
Target: 5'- -aGGCCCUcuaggcacuacaaCGCC-CC----GGGCCGCu -3' miRNA: 3'- cgCCGGGA-------------GCGGuGGaauuUCCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 40896 | 0.68 | 0.646349 |
Target: 5'- -gGGCCCU-GCCaaaggaggggacccgACCgggUAAGcGGCCGCu -3' miRNA: 3'- cgCCGGGAgCGG---------------UGGa--AUUU-CCGGCG- -5' |
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27162 | 3' | -57.9 | NC_005832.1 | + | 56459 | 0.68 | 0.642219 |
Target: 5'- aGUGGCCCUgGgCUACgUccccAGGCCGUc -3' miRNA: 3'- -CGCCGGGAgC-GGUGgAauu-UCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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