miRNA: 3'- aacgCCGGGAGAACUa----CCu--UUUCUGG- -5'
miRNA: 3'- aaCGCCGGGAGaaCUACCuUUUCUGG- -5'
miRNA: 3'- -AACGCCGGGAGAACUACCUUUUCUGG- -5'
Results 41 - 43 of 43 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 27162 | 5' | -51.7 | NC_005832.1 | + | 52178 | 0.75 | 0.572067 |
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Target: 5'- ---aGGCCCUCUUGAcguagGGucuGGGGACCa -3' miRNA: 3'- aacgCCGGGAGAACUa----CCu--UUUCUGG- -5' |
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| 27162 | 5' | -51.7 | NC_005832.1 | + | 26611 | 0.77 | 0.457782 |
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Target: 5'- -cGCGGCCUUUaaGGUGGcGAGGGCCg -3' miRNA: 3'- aaCGCCGGGAGaaCUACCuUUUCUGG- -5' |
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| 27162 | 5' | -51.7 | NC_005832.1 | + | 26513 | 1.1 | 0.00368 |
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Target: 5'- uUUGCGGCCCUCUUGAUGGAAAAGACCu -3' miRNA: 3'- -AACGCCGGGAGAACUACCUUUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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