miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2717 3' -63.9 NC_001491.2 + 9610 0.66 0.606815
Target:  5'- cCGGCCGCaccuaACCCCaCUgGGCUGGaucuCACc -3'
miRNA:   3'- -GCCGGUGg----UGGGG-GAgCUGGCC----GUGc -5'
2717 3' -63.9 NC_001491.2 + 35996 0.66 0.606815
Target:  5'- cCGGCCcuuauuGCCaACCCCCUCugGGCCcuGGC-Ca -3'
miRNA:   3'- -GCCGG------UGG-UGGGGGAG--CUGG--CCGuGc -5'
2717 3' -63.9 NC_001491.2 + 62430 0.66 0.606815
Target:  5'- cCGcGCCuCCACCUCCUCGACgauGCAg- -3'
miRNA:   3'- -GC-CGGuGGUGGGGGAGCUGgc-CGUgc -5'
2717 3' -63.9 NC_001491.2 + 122580 0.66 0.606815
Target:  5'- -cGCUACCGCUCCCcCaGCCGGgGCu -3'
miRNA:   3'- gcCGGUGGUGGGGGaGcUGGCCgUGc -5'
2717 3' -63.9 NC_001491.2 + 64838 0.66 0.606815
Target:  5'- aGGCCAUCACCCCCgcUUG-UCuGUugGg -3'
miRNA:   3'- gCCGGUGGUGGGGG--AGCuGGcCGugC- -5'
2717 3' -63.9 NC_001491.2 + 130644 0.66 0.597223
Target:  5'- gGGCUACCccgacgACCCCCUgcgCGACCucuguGGUGCc -3'
miRNA:   3'- gCCGGUGG------UGGGGGA---GCUGG-----CCGUGc -5'
2717 3' -63.9 NC_001491.2 + 147973 0.66 0.591478
Target:  5'- gGGCCGCCAgcagcgccgagagucCCCCCUUGAggUCGG-ACc -3'
miRNA:   3'- gCCGGUGGU---------------GGGGGAGCU--GGCCgUGc -5'
2717 3' -63.9 NC_001491.2 + 3094 0.66 0.578111
Target:  5'- aGGuCUACUACCCUUcCGGCCaGGCAgCGa -3'
miRNA:   3'- gCC-GGUGGUGGGGGaGCUGG-CCGU-GC- -5'
2717 3' -63.9 NC_001491.2 + 5404 0.66 0.578111
Target:  5'- gCGGCCGCCAgCUCCauagCGGaugucugcaGGCGCGu -3'
miRNA:   3'- -GCCGGUGGUgGGGGa---GCUgg-------CCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 2537 0.66 0.578111
Target:  5'- aCGGCagaguCGCauuCCCCCgUCGGCCuGGCAgGg -3'
miRNA:   3'- -GCCG-----GUGgu-GGGGG-AGCUGG-CCGUgC- -5'
2717 3' -63.9 NC_001491.2 + 118919 0.66 0.578111
Target:  5'- gGGCgGCUuCUgCCUCGGCggagcuCGGCGCGg -3'
miRNA:   3'- gCCGgUGGuGGgGGAGCUG------GCCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 50342 0.66 0.568604
Target:  5'- -cGCCGCCACCCacgCCgcagUCG-CCGGCgaGCGg -3'
miRNA:   3'- gcCGGUGGUGGG---GG----AGCuGGCCG--UGC- -5'
2717 3' -63.9 NC_001491.2 + 38539 0.66 0.568604
Target:  5'- uCGGCCACCAgUCUUUCGGUCaGGUAUGu -3'
miRNA:   3'- -GCCGGUGGUgGGGGAGCUGG-CCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 77626 0.66 0.568604
Target:  5'- uCGGCCGCUACCCCagUgGugCcucccacggaGGCACc -3'
miRNA:   3'- -GCCGGUGGUGGGGg-AgCugG----------CCGUGc -5'
2717 3' -63.9 NC_001491.2 + 147778 0.66 0.568604
Target:  5'- uGGCCGCCAgCUCCC-CGAagCGcGCGCc -3'
miRNA:   3'- gCCGGUGGU-GGGGGaGCUg-GC-CGUGc -5'
2717 3' -63.9 NC_001491.2 + 147232 0.66 0.559136
Target:  5'- gGGCUGCUGCCCCCggGAgCGG-GCGu -3'
miRNA:   3'- gCCGGUGGUGGGGGagCUgGCCgUGC- -5'
2717 3' -63.9 NC_001491.2 + 123135 0.66 0.559136
Target:  5'- gCGGCCAg-GCCUCCgcgggCGGCCcGGCGCc -3'
miRNA:   3'- -GCCGGUggUGGGGGa----GCUGG-CCGUGc -5'
2717 3' -63.9 NC_001491.2 + 8040 0.66 0.559136
Target:  5'- aCGGUUccuguGCCACCCCCUUaccucCUGGCAgGg -3'
miRNA:   3'- -GCCGG-----UGGUGGGGGAGcu---GGCCGUgC- -5'
2717 3' -63.9 NC_001491.2 + 101843 0.66 0.559136
Target:  5'- gCGGCUcaaGCgCGCCCCCggcgCGACCGucCACc -3'
miRNA:   3'- -GCCGG---UG-GUGGGGGa---GCUGGCc-GUGc -5'
2717 3' -63.9 NC_001491.2 + 115937 0.66 0.549713
Target:  5'- gCGGCCGCCuccccgGCCCaCCUCaGCCaGGagGCGa -3'
miRNA:   3'- -GCCGGUGG------UGGG-GGAGcUGG-CCg-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.