Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 146894 | 0.73 | 0.252222 |
Target: 5'- aGGCCcggGCCcggGCCCCCUCGGCguuguagcgcaccagCGGCGCc -3' miRNA: 3'- gCCGG---UGG---UGGGGGAGCUG---------------GCCGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 115304 | 0.74 | 0.203305 |
Target: 5'- cCGGCCuCC-CCCCCggCGGCucuCGGCGCGa -3' miRNA: 3'- -GCCGGuGGuGGGGGa-GCUG---GCCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 143053 | 0.74 | 0.198616 |
Target: 5'- cCGGCC-CCACCCCaUCGACguaacaCGGCGCc -3' miRNA: 3'- -GCCGGuGGUGGGGgAGCUG------GCCGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 114593 | 0.74 | 0.195847 |
Target: 5'- gGGCCugGCUGCgCCCCguguaccucgccugCGGCCGGCGCGg -3' miRNA: 3'- gCCGG--UGGUG-GGGGa-------------GCUGGCCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 107073 | 0.74 | 0.189519 |
Target: 5'- gCGGCCACCAgCCCC-C-ACgGGCACa -3' miRNA: 3'- -GCCGGUGGUgGGGGaGcUGgCCGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 145696 | 0.77 | 0.129127 |
Target: 5'- aCGGCCGuCUgcgggGCCUCCUCGGCCGGUGCc -3' miRNA: 3'- -GCCGGU-GG-----UGGGGGAGCUGGCCGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 138314 | 1.07 | 0.000887 |
Target: 5'- cCGGCCACCACCCCCUCGACCGGCACGc -3' miRNA: 3'- -GCCGGUGGUGGGGGAGCUGGCCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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