miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2717 3' -63.9 NC_001491.2 + 56461 0.7 0.376759
Target:  5'- -cGCUGCCAUCCCCUUGgcGCUGaGCGCGu -3'
miRNA:   3'- gcCGGUGGUGGGGGAGC--UGGC-CGUGC- -5'
2717 3' -63.9 NC_001491.2 + 49674 0.7 0.361554
Target:  5'- gGGCCaaacaccccACCGCCCCCaUCcGCCGGC-Cu -3'
miRNA:   3'- gCCGG---------UGGUGGGGG-AGcUGGCCGuGc -5'
2717 3' -63.9 NC_001491.2 + 123238 0.69 0.433254
Target:  5'- aGG-UACCGCCCCa-CGGCgCGGCGCa -3'
miRNA:   3'- gCCgGUGGUGGGGgaGCUG-GCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 144198 0.69 0.408434
Target:  5'- gGGCCucggaGCCACCCCCUCGGgacaUCGuuGUugGa -3'
miRNA:   3'- gCCGG-----UGGUGGGGGAGCU----GGC--CGugC- -5'
2717 3' -63.9 NC_001491.2 + 116820 0.69 0.424883
Target:  5'- aGGCCGCCGCUgCCgCGGCCaGCcaGCa -3'
miRNA:   3'- gCCGGUGGUGGgGGaGCUGGcCG--UGc -5'
2717 3' -63.9 NC_001491.2 + 123094 0.69 0.40036
Target:  5'- gCGuCCGCUGCCUCCgcCGACaCGGCGCGc -3'
miRNA:   3'- -GCcGGUGGUGGGGGa-GCUG-GCCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 7375 0.69 0.384521
Target:  5'- -uGCCugCGCgccaagcaCCUUCGAUCGGCACGu -3'
miRNA:   3'- gcCGGugGUGg-------GGGAGCUGGCCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 17942 0.68 0.441721
Target:  5'- uGGCCAuguCCACCaugcguCCCa-GGCCGGCGCc -3'
miRNA:   3'- gCCGGU---GGUGG------GGGagCUGGCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 20026 0.68 0.458061
Target:  5'- -aGCUGCCaaACCUCCUCGACCagagugcugcgggGGCGCa -3'
miRNA:   3'- gcCGGUGG--UGGGGGAGCUGG-------------CCGUGc -5'
2717 3' -63.9 NC_001491.2 + 138580 0.68 0.45893
Target:  5'- uCGGCCccuGCCAauuugugaUCCCCUCGGCgaUGGCGgGg -3'
miRNA:   3'- -GCCGG---UGGU--------GGGGGAGCUG--GCCGUgC- -5'
2717 3' -63.9 NC_001491.2 + 144852 0.68 0.45893
Target:  5'- aGGaCCGCCGCUgCCggCGGCCGaGgGCGa -3'
miRNA:   3'- gCC-GGUGGUGGgGGa-GCUGGC-CgUGC- -5'
2717 3' -63.9 NC_001491.2 + 145559 0.68 0.45893
Target:  5'- cCGGCCcggcggagaaGCCAUCCCCgCGGgCGGUuCGg -3'
miRNA:   3'- -GCCGG----------UGGUGGGGGaGCUgGCCGuGC- -5'
2717 3' -63.9 NC_001491.2 + 43041 0.68 0.47649
Target:  5'- gCGGCCGCCGCCCguCCgcuuUCG-CCGGgagaGCGc -3'
miRNA:   3'- -GCCGGUGGUGGG--GG----AGCuGGCCg---UGC- -5'
2717 3' -63.9 NC_001491.2 + 125512 0.68 0.480042
Target:  5'- aCGGCCGCCGCcgcgacgccgccccgCCCCgggGACCcgcgGGCGCc -3'
miRNA:   3'- -GCCGGUGGUG---------------GGGGag-CUGG----CCGUGc -5'
2717 3' -63.9 NC_001491.2 + 130809 0.68 0.482715
Target:  5'- aGaGUCGCCACCCCCagcucuaugaugggUCGGuCUGGCGgGa -3'
miRNA:   3'- gC-CGGUGGUGGGGG--------------AGCU-GGCCGUgC- -5'
2717 3' -63.9 NC_001491.2 + 81322 0.68 0.482715
Target:  5'- aCGGCgGCCuggccgugggcaacGCCCgCCggcgUGGCCGGCAUc -3'
miRNA:   3'- -GCCGgUGG--------------UGGG-GGa---GCUGGCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 12303 0.68 0.485395
Target:  5'- -cGCCACCAgCCCCUCuGGCCagaccaaGCACc -3'
miRNA:   3'- gcCGGUGGUgGGGGAG-CUGGc------CGUGc -5'
2717 3' -63.9 NC_001491.2 + 97563 0.67 0.494377
Target:  5'- uGGUCGCCACCgCCUUcacccgcaGACgCGGCGgGu -3'
miRNA:   3'- gCCGGUGGUGGgGGAG--------CUG-GCCGUgC- -5'
2717 3' -63.9 NC_001491.2 + 45246 0.67 0.512564
Target:  5'- gGGCCGCCGCagaUUUGGCCGGgGCc -3'
miRNA:   3'- gCCGGUGGUGgggGAGCUGGCCgUGc -5'
2717 3' -63.9 NC_001491.2 + 45213 0.67 0.512564
Target:  5'- gGGCCGCCGCagaUUUGGCCGGgGCc -3'
miRNA:   3'- gCCGGUGGUGgggGAGCUGGCCgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.