miRNA display CGI

Results 61 - 67 of 67 are showing below:
Show page: 1 2 3 4

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
2717	3'	-63.9	NC_001491.2	+	123135	0.66	0.559136
	Target:  5'- gCGGCCAg-GCCUCCgcgggCGGCCcGGCGCc -3' miRNA:   3'- -GCCGGUggUGGGGGa----GCUGG-CCGUGc -5'
2717	3'	-63.9	NC_001491.2	+	8040	0.66	0.559136
	Target:  5'- aCGGUUccuguGCCACCCCCUUaccucCUGGCAgGg -3' miRNA:   3'- -GCCGG-----UGGUGGGGGAGcu---GGCCGUgC- -5'
2717	3'	-63.9	NC_001491.2	+	101843	0.66	0.559136
	Target:  5'- gCGGCUcaaGCgCGCCCCCggcgCGACCGucCACc -3' miRNA:   3'- -GCCGG---UG-GUGGGGGa---GCUGGCc-GUGc -5'
2717	3'	-63.9	NC_001491.2	+	147778	0.66	0.568604
	Target:  5'- uGGCCGCCAgCUCCC-CGAagCGcGCGCc -3' miRNA:   3'- gCCGGUGGU-GGGGGaGCUg-GC-CGUGc -5'
2717	3'	-63.9	NC_001491.2	+	77626	0.66	0.568604
	Target:  5'- uCGGCCGCUACCCCagUgGugCcucccacggaGGCACc -3' miRNA:   3'- -GCCGGUGGUGGGGg-AgCugG----------CCGUGc -5'
2717	3'	-63.9	NC_001491.2	+	38539	0.66	0.568604
	Target:  5'- uCGGCCACCAgUCUUUCGGUCaGGUAUGu -3' miRNA:   3'- -GCCGGUGGUgGGGGAGCUGG-CCGUGC- -5'
2717	3'	-63.9	NC_001491.2	+	9610	0.66	0.606815
	Target:  5'- cCGGCCGCaccuaACCCCaCUgGGCUGGaucuCACc -3' miRNA:   3'- -GCCGGUGg----UGGGG-GAgCUGGCC----GUGc -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home