miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2717 3' -63.9 NC_001491.2 + 138314 1.07 0.000887
Target:  5'- cCGGCCACCACCCCCUCGACCGGCACGc -3'
miRNA:   3'- -GCCGGUGGUGGGGGAGCUGGCCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 145696 0.77 0.129127
Target:  5'- aCGGCCGuCUgcgggGCCUCCUCGGCCGGUGCc -3'
miRNA:   3'- -GCCGGU-GG-----UGGGGGAGCUGGCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 107073 0.74 0.189519
Target:  5'- gCGGCCACCAgCCCC-C-ACgGGCACa -3'
miRNA:   3'- -GCCGGUGGUgGGGGaGcUGgCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 114593 0.74 0.195847
Target:  5'- gGGCCugGCUGCgCCCCguguaccucgccugCGGCCGGCGCGg -3'
miRNA:   3'- gCCGG--UGGUG-GGGGa-------------GCUGGCCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 143053 0.74 0.198616
Target:  5'- cCGGCC-CCACCCCaUCGACguaacaCGGCGCc -3'
miRNA:   3'- -GCCGGuGGUGGGGgAGCUG------GCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 115304 0.74 0.203305
Target:  5'- cCGGCCuCC-CCCCCggCGGCucuCGGCGCGa -3'
miRNA:   3'- -GCCGGuGGuGGGGGa-GCUG---GCCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 117854 0.73 0.223033
Target:  5'- gGGCCGCCACCCCgaaGAgcugccgcuCCGGCGCc -3'
miRNA:   3'- gCCGGUGGUGGGGgagCU---------GGCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 34485 0.73 0.233494
Target:  5'- uCGGCCACgCGCgCCCUgGcCCGGgACGa -3'
miRNA:   3'- -GCCGGUG-GUGgGGGAgCuGGCCgUGC- -5'
2717 3' -63.9 NC_001491.2 + 146964 0.73 0.249956
Target:  5'- aCGGCCucccCCAacauCCCCC-CGACCaGGCugGg -3'
miRNA:   3'- -GCCGGu---GGU----GGGGGaGCUGG-CCGugC- -5'
2717 3' -63.9 NC_001491.2 + 146894 0.73 0.252222
Target:  5'- aGGCCcggGCCcggGCCCCCUCGGCguuguagcgcaccagCGGCGCc -3'
miRNA:   3'- gCCGG---UGG---UGGGGGAGCUG---------------GCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 147563 0.72 0.26087
Target:  5'- aCGcGCCugaauCCGCCccgacggucggggCCCUCGGCUGGCAUGg -3'
miRNA:   3'- -GC-CGGu----GGUGG-------------GGGAGCUGGCCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 118334 0.72 0.285739
Target:  5'- gCGGCUGCCGCCCagCCggCGuccCCGGCACc -3'
miRNA:   3'- -GCCGGUGGUGGG--GGa-GCu--GGCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 99763 0.72 0.285739
Target:  5'- --aCCACaACCCCUUUGACCaGGCACGg -3'
miRNA:   3'- gccGGUGgUGGGGGAGCUGG-CCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 134017 0.72 0.285739
Target:  5'- uCGGCCGCCgaugcGCCCCCcUGuCCGGaGCGg -3'
miRNA:   3'- -GCCGGUGG-----UGGGGGaGCuGGCCgUGC- -5'
2717 3' -63.9 NC_001491.2 + 41167 0.71 0.311768
Target:  5'- uGGCUAUCGCCUCCUCGAa-GGCGg- -3'
miRNA:   3'- gCCGGUGGUGGGGGAGCUggCCGUgc -5'
2717 3' -63.9 NC_001491.2 + 8809 0.71 0.318551
Target:  5'- cCGGCC-CCGCUCCagucuaUCGAgUGGCACu -3'
miRNA:   3'- -GCCGGuGGUGGGGg-----AGCUgGCCGUGc -5'
2717 3' -63.9 NC_001491.2 + 115478 0.71 0.331741
Target:  5'- gCGGCCcgcugcaGCgGCCCCC-CGGCCcgggacGGCGCGc -3'
miRNA:   3'- -GCCGG-------UGgUGGGGGaGCUGG------CCGUGC- -5'
2717 3' -63.9 NC_001491.2 + 86335 0.71 0.332446
Target:  5'- aGGCguCCGCCCCCcCcGCCaGGCugGg -3'
miRNA:   3'- gCCGguGGUGGGGGaGcUGG-CCGugC- -5'
2717 3' -63.9 NC_001491.2 + 146717 0.7 0.361554
Target:  5'- gGGCCGCCGUCUCCagccCGGCCGGguUGg -3'
miRNA:   3'- gCCGGUGGUGGGGGa---GCUGGCCguGC- -5'
2717 3' -63.9 NC_001491.2 + 49674 0.7 0.361554
Target:  5'- gGGCCaaacaccccACCGCCCCCaUCcGCCGGC-Cu -3'
miRNA:   3'- gCCGG---------UGGUGGGGG-AGcUGGCCGuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.