Results 41 - 60 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 123238 | 0.69 | 0.433254 |
Target: 5'- aGG-UACCGCCCCa-CGGCgCGGCGCa -3' miRNA: 3'- gCCgGUGGUGGGGgaGCUG-GCCGUGc -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 116820 | 0.69 | 0.424883 |
Target: 5'- aGGCCGCCGCUgCCgCGGCCaGCcaGCa -3' miRNA: 3'- gCCGGUGGUGGgGGaGCUGGcCG--UGc -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 144198 | 0.69 | 0.408434 |
Target: 5'- gGGCCucggaGCCACCCCCUCGGgacaUCGuuGUugGa -3' miRNA: 3'- gCCGG-----UGGUGGGGGAGCU----GGC--CGugC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 123094 | 0.69 | 0.40036 |
Target: 5'- gCGuCCGCUGCCUCCgcCGACaCGGCGCGc -3' miRNA: 3'- -GCcGGUGGUGGGGGa-GCUG-GCCGUGC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 7375 | 0.69 | 0.384521 |
Target: 5'- -uGCCugCGCgccaagcaCCUUCGAUCGGCACGu -3' miRNA: 3'- gcCGGugGUGg-------GGGAGCUGGCCGUGC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 56461 | 0.7 | 0.376759 |
Target: 5'- -cGCUGCCAUCCCCUUGgcGCUGaGCGCGu -3' miRNA: 3'- gcCGGUGGUGGGGGAGC--UGGC-CGUGC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 111199 | 0.7 | 0.369103 |
Target: 5'- aGGCCGgCugCCCCagGACCagcuagucGGCGCa -3' miRNA: 3'- gCCGGUgGugGGGGagCUGG--------CCGUGc -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 146717 | 0.7 | 0.361554 |
Target: 5'- gGGCCGCCGUCUCCagccCGGCCGGguUGg -3' miRNA: 3'- gCCGGUGGUGGGGGa---GCUGGCCguGC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 49674 | 0.7 | 0.361554 |
Target: 5'- gGGCCaaacaccccACCGCCCCCaUCcGCCGGC-Cu -3' miRNA: 3'- gCCGG---------UGGUGGGGG-AGcUGGCCGuGc -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 86335 | 0.71 | 0.332446 |
Target: 5'- aGGCguCCGCCCCCcCcGCCaGGCugGg -3' miRNA: 3'- gCCGguGGUGGGGGaGcUGG-CCGugC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 115478 | 0.71 | 0.331741 |
Target: 5'- gCGGCCcgcugcaGCgGCCCCC-CGGCCcgggacGGCGCGc -3' miRNA: 3'- -GCCGG-------UGgUGGGGGaGCUGG------CCGUGC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 8809 | 0.71 | 0.318551 |
Target: 5'- cCGGCC-CCGCUCCagucuaUCGAgUGGCACu -3' miRNA: 3'- -GCCGGuGGUGGGGg-----AGCUgGCCGUGc -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 41167 | 0.71 | 0.311768 |
Target: 5'- uGGCUAUCGCCUCCUCGAa-GGCGg- -3' miRNA: 3'- gCCGGUGGUGGGGGAGCUggCCGUgc -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 118334 | 0.72 | 0.285739 |
Target: 5'- gCGGCUGCCGCCCagCCggCGuccCCGGCACc -3' miRNA: 3'- -GCCGGUGGUGGG--GGa-GCu--GGCCGUGc -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 134017 | 0.72 | 0.285739 |
Target: 5'- uCGGCCGCCgaugcGCCCCCcUGuCCGGaGCGg -3' miRNA: 3'- -GCCGGUGG-----UGGGGGaGCuGGCCgUGC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 99763 | 0.72 | 0.285739 |
Target: 5'- --aCCACaACCCCUUUGACCaGGCACGg -3' miRNA: 3'- gccGGUGgUGGGGGAGCUGG-CCGUGC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 147563 | 0.72 | 0.26087 |
Target: 5'- aCGcGCCugaauCCGCCccgacggucggggCCCUCGGCUGGCAUGg -3' miRNA: 3'- -GC-CGGu----GGUGG-------------GGGAGCUGGCCGUGC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 146894 | 0.73 | 0.252222 |
Target: 5'- aGGCCcggGCCcggGCCCCCUCGGCguuguagcgcaccagCGGCGCc -3' miRNA: 3'- gCCGG---UGG---UGGGGGAGCUG---------------GCCGUGc -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 146964 | 0.73 | 0.249956 |
Target: 5'- aCGGCCucccCCAacauCCCCC-CGACCaGGCugGg -3' miRNA: 3'- -GCCGGu---GGU----GGGGGaGCUGG-CCGugC- -5' |
|||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 34485 | 0.73 | 0.233494 |
Target: 5'- uCGGCCACgCGCgCCCUgGcCCGGgACGa -3' miRNA: 3'- -GCCGGUG-GUGgGGGAgCuGGCCgUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home