Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 146840 | 0.67 | 0.531021 |
Target: 5'- gGGCCACCACCa----GAaCGGCGCGc -3' miRNA: 3'- gCCGGUGGUGGgggagCUgGCCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 146894 | 0.73 | 0.252222 |
Target: 5'- aGGCCcggGCCcggGCCCCCUCGGCguuguagcgcaccagCGGCGCc -3' miRNA: 3'- gCCGG---UGG---UGGGGGAGCUG---------------GCCGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 146964 | 0.73 | 0.249956 |
Target: 5'- aCGGCCucccCCAacauCCCCC-CGACCaGGCugGg -3' miRNA: 3'- -GCCGGu---GGU----GGGGGaGCUGG-CCGugC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 147232 | 0.66 | 0.559136 |
Target: 5'- gGGCUGCUGCCCCCggGAgCGG-GCGu -3' miRNA: 3'- gCCGGUGGUGGGGGagCUgGCCgUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 147563 | 0.72 | 0.26087 |
Target: 5'- aCGcGCCugaauCCGCCccgacggucggggCCCUCGGCUGGCAUGg -3' miRNA: 3'- -GC-CGGu----GGUGG-------------GGGAGCUGGCCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 147778 | 0.66 | 0.568604 |
Target: 5'- uGGCCGCCAgCUCCC-CGAagCGcGCGCc -3' miRNA: 3'- gCCGGUGGU-GGGGGaGCUg-GC-CGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 147973 | 0.66 | 0.591478 |
Target: 5'- gGGCCGCCAgcagcgccgagagucCCCCCUUGAggUCGG-ACc -3' miRNA: 3'- gCCGGUGGU---------------GGGGGAGCU--GGCCgUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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