Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2717 | 3' | -63.9 | NC_001491.2 | + | 138314 | 1.07 | 0.000887 |
Target: 5'- cCGGCCACCACCCCCUCGACCGGCACGc -3' miRNA: 3'- -GCCGGUGGUGGGGGAGCUGGCCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 38539 | 0.66 | 0.568604 |
Target: 5'- uCGGCCACCAgUCUUUCGGUCaGGUAUGu -3' miRNA: 3'- -GCCGGUGGUgGGGGAGCUGG-CCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 77626 | 0.66 | 0.568604 |
Target: 5'- uCGGCCGCUACCCCagUgGugCcucccacggaGGCACc -3' miRNA: 3'- -GCCGGUGGUGGGGg-AgCugG----------CCGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 147778 | 0.66 | 0.568604 |
Target: 5'- uGGCCGCCAgCUCCC-CGAagCGcGCGCc -3' miRNA: 3'- gCCGGUGGU-GGGGGaGCUg-GC-CGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 101843 | 0.66 | 0.559136 |
Target: 5'- gCGGCUcaaGCgCGCCCCCggcgCGACCGucCACc -3' miRNA: 3'- -GCCGG---UG-GUGGGGGa---GCUGGCc-GUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 8040 | 0.66 | 0.559136 |
Target: 5'- aCGGUUccuguGCCACCCCCUUaccucCUGGCAgGg -3' miRNA: 3'- -GCCGG-----UGGUGGGGGAGcu---GGCCGUgC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 123135 | 0.66 | 0.559136 |
Target: 5'- gCGGCCAg-GCCUCCgcgggCGGCCcGGCGCc -3' miRNA: 3'- -GCCGGUggUGGGGGa----GCUGG-CCGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 147232 | 0.66 | 0.559136 |
Target: 5'- gGGCUGCUGCCCCCggGAgCGG-GCGu -3' miRNA: 3'- gCCGGUGGUGGGGGagCUgGCCgUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 80533 | 0.66 | 0.549713 |
Target: 5'- gCGGUgGCgGuuCCCgCGuCCGGCGCGg -3' miRNA: 3'- -GCCGgUGgUggGGGaGCuGGCCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 50342 | 0.66 | 0.568604 |
Target: 5'- -cGCCGCCACCCacgCCgcagUCG-CCGGCgaGCGg -3' miRNA: 3'- gcCGGUGGUGGG---GG----AGCuGGCCG--UGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 3094 | 0.66 | 0.578111 |
Target: 5'- aGGuCUACUACCCUUcCGGCCaGGCAgCGa -3' miRNA: 3'- gCC-GGUGGUGGGGGaGCUGG-CCGU-GC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 5404 | 0.66 | 0.578111 |
Target: 5'- gCGGCCGCCAgCUCCauagCGGaugucugcaGGCGCGu -3' miRNA: 3'- -GCCGGUGGUgGGGGa---GCUgg-------CCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 35996 | 0.66 | 0.606815 |
Target: 5'- cCGGCCcuuauuGCCaACCCCCUCugGGCCcuGGC-Ca -3' miRNA: 3'- -GCCGG------UGG-UGGGGGAG--CUGG--CCGuGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 62430 | 0.66 | 0.606815 |
Target: 5'- cCGcGCCuCCACCUCCUCGACgauGCAg- -3' miRNA: 3'- -GC-CGGuGGUGGGGGAGCUGgc-CGUgc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 122580 | 0.66 | 0.606815 |
Target: 5'- -cGCUACCGCUCCCcCaGCCGGgGCu -3' miRNA: 3'- gcCGGUGGUGGGGGaGcUGGCCgUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 64838 | 0.66 | 0.606815 |
Target: 5'- aGGCCAUCACCCCCgcUUG-UCuGUugGg -3' miRNA: 3'- gCCGGUGGUGGGGG--AGCuGGcCGugC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 130644 | 0.66 | 0.597223 |
Target: 5'- gGGCUACCccgacgACCCCCUgcgCGACCucuguGGUGCc -3' miRNA: 3'- gCCGGUGG------UGGGGGA---GCUGG-----CCGUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 147973 | 0.66 | 0.591478 |
Target: 5'- gGGCCGCCAgcagcgccgagagucCCCCCUUGAggUCGG-ACc -3' miRNA: 3'- gCCGGUGGU---------------GGGGGAGCU--GGCCgUGc -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 118919 | 0.66 | 0.578111 |
Target: 5'- gGGCgGCUuCUgCCUCGGCggagcuCGGCGCGg -3' miRNA: 3'- gCCGgUGGuGGgGGAGCUG------GCCGUGC- -5' |
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2717 | 3' | -63.9 | NC_001491.2 | + | 2537 | 0.66 | 0.578111 |
Target: 5'- aCGGCagaguCGCauuCCCCCgUCGGCCuGGCAgGg -3' miRNA: 3'- -GCCG-----GUGgu-GGGGG-AGCUGG-CCGUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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