miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 3' -55.8 NC_005832.1 + 4677 0.66 0.864426
Target:  5'- aGGUgGCcaGGAUcuCCUCGGGCGAgCa- -3'
miRNA:   3'- -CCAgCG--UCUAuuGGGGCCCGUUgGag -5'
27170 3' -55.8 NC_005832.1 + 49726 0.66 0.864426
Target:  5'- --aCGguGAUcuugGGCuuCCCGGGCAuggACCUCc -3'
miRNA:   3'- ccaGCguCUA----UUG--GGGCCCGU---UGGAG- -5'
27170 3' -55.8 NC_005832.1 + 57407 0.66 0.848566
Target:  5'- aGGUUGCGGAU--UCuuGGGCAgucacACCg- -3'
miRNA:   3'- -CCAGCGUCUAuuGGggCCCGU-----UGGag -5'
27170 3' -55.8 NC_005832.1 + 58557 0.66 0.841158
Target:  5'- -uUCGCAGAUGuacgggguguagguACCCuUGGGCcacaguuugucuccuAGCCUCc -3'
miRNA:   3'- ccAGCGUCUAU--------------UGGG-GCCCG---------------UUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 8099 0.66 0.840324
Target:  5'- aGGaCGUgcgAGGUcgGACCCCugagcaGGGCGGCCUUc -3'
miRNA:   3'- -CCaGCG---UCUA--UUGGGG------CCCGUUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 36137 0.66 0.831884
Target:  5'- cGGcCGuCAGGcccucuaggcacUAcaacGCCCCGGGCcGCUUCa -3'
miRNA:   3'- -CCaGC-GUCU------------AU----UGGGGCCCGuUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 1503 0.67 0.81444
Target:  5'- aGUUGCAGu--GCCUgGGGUcgggagccgccAGCCUCa -3'
miRNA:   3'- cCAGCGUCuauUGGGgCCCG-----------UUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 18712 0.67 0.805454
Target:  5'- uGGUCuCAGAcAGCUCCuuuGCGACCUCu -3'
miRNA:   3'- -CCAGcGUCUaUUGGGGcc-CGUUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 56619 0.67 0.783233
Target:  5'- ---aGCAGAggggagaugccaaGGCCUCGGGCcugGACCUCa -3'
miRNA:   3'- ccagCGUCUa------------UUGGGGCCCG---UUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 92541 0.67 0.777544
Target:  5'- --aCGgGGAcGGCUCUGGGCuGCCUCc -3'
miRNA:   3'- ccaGCgUCUaUUGGGGCCCGuUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 80618 0.68 0.767956
Target:  5'- gGGUCGuCAGAccuGCCCCuGGGgaAACCa- -3'
miRNA:   3'- -CCAGC-GUCUau-UGGGG-CCCg-UUGGag -5'
27170 3' -55.8 NC_005832.1 + 56480 0.68 0.765054
Target:  5'- gGGUCuuauaggaggaggaGCAG-UGGCCCUGGGCuACgUCc -3'
miRNA:   3'- -CCAG--------------CGUCuAUUGGGGCCCGuUGgAG- -5'
27170 3' -55.8 NC_005832.1 + 26317 0.68 0.748408
Target:  5'- uGUCGCAGuuccgAACCUCugcccGGUGGCCUCg -3'
miRNA:   3'- cCAGCGUCua---UUGGGGc----CCGUUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 961 0.68 0.748408
Target:  5'- gGGggaGCAGAcgugcGCCUCGGGCuucugcACCUCu -3'
miRNA:   3'- -CCag-CGUCUau---UGGGGCCCGu-----UGGAG- -5'
27170 3' -55.8 NC_005832.1 + 15521 0.68 0.728433
Target:  5'- uGagGCAGAUuGgCCUGGGC-ACCUCc -3'
miRNA:   3'- cCagCGUCUAuUgGGGCCCGuUGGAG- -5'
27170 3' -55.8 NC_005832.1 + 80836 0.69 0.677141
Target:  5'- gGGUCGCGGugucCCCCGGGgc-CCUg -3'
miRNA:   3'- -CCAGCGUCuauuGGGGCCCguuGGAg -5'
27170 3' -55.8 NC_005832.1 + 5574 0.71 0.552144
Target:  5'- aGGUUGuCGGcuAUGGCUUCGGGCAcccccACCUCg -3'
miRNA:   3'- -CCAGC-GUC--UAUUGGGGCCCGU-----UGGAG- -5'
27170 3' -55.8 NC_005832.1 + 48986 0.72 0.521694
Target:  5'- aGGUCGCAcucGAcGGCCuuGGGCGcagucCCUCu -3'
miRNA:   3'- -CCAGCGU---CUaUUGGggCCCGUu----GGAG- -5'
27170 3' -55.8 NC_005832.1 + 62164 0.72 0.511686
Target:  5'- ---aGCAGAUGGCCCUcuauGGGUAACCg- -3'
miRNA:   3'- ccagCGUCUAUUGGGG----CCCGUUGGag -5'
27170 3' -55.8 NC_005832.1 + 40909 0.72 0.509694
Target:  5'- cGUCGguGccgggguggugGACCCCgacuacagGGGCAACCUCg -3'
miRNA:   3'- cCAGCguCua---------UUGGGG--------CCCGUUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.