miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 39215 0.66 0.799737
Target:  5'- -uGGGGUC-CCGgacGGCccuCCUGGGAUCCg -3'
miRNA:   3'- cgUCCCGGcGGU---UCGu--GGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 5364 0.66 0.799737
Target:  5'- aCAGGGUCuugagccugaGCUggGcCACC--AGACCCu -3'
miRNA:   3'- cGUCCCGG----------CGGuuC-GUGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 33594 0.66 0.799737
Target:  5'- -gAGGGUCGCCGcgGGCAagauAGGCuCCa -3'
miRNA:   3'- cgUCCCGGCGGU--UCGUggauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 20797 0.66 0.799737
Target:  5'- gGCAGGGCCcucaCCAgggcgguaaGGUACUcuGGGCCg -3'
miRNA:   3'- -CGUCCCGGc---GGU---------UCGUGGauUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 54048 0.66 0.799737
Target:  5'- aCGuGGCC-CCAGGCcuCCUucAGGACCCc -3'
miRNA:   3'- cGUcCCGGcGGUUCGu-GGA--UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 80558 0.66 0.79054
Target:  5'- -gGGGGCauggGCCAAGuCACCaggguaaAGGAUCCc -3'
miRNA:   3'- cgUCCCGg---CGGUUC-GUGGa------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 20832 0.66 0.79054
Target:  5'- cCAGGGCgGCCucGUACuCUGcucccGAUCCg -3'
miRNA:   3'- cGUCCCGgCGGuuCGUG-GAUu----CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56520 0.66 0.79054
Target:  5'- ---uGGCCGgCAGGaggGCCaUAGGACCCc -3'
miRNA:   3'- cgucCCGGCgGUUCg--UGG-AUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 10479 0.66 0.79054
Target:  5'- aCGGGGCCuaCAuaucccuGCugCUGGGGUCCa -3'
miRNA:   3'- cGUCCCGGcgGUu------CGugGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 33085 0.66 0.79054
Target:  5'- cCGGGGUgGCCGuccAGUuCCUGauGGGCCUc -3'
miRNA:   3'- cGUCCCGgCGGU---UCGuGGAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 51744 0.66 0.79054
Target:  5'- ---aGGCCGCCuGAGCcauACCcAGGGCCUc -3'
miRNA:   3'- cgucCCGGCGG-UUCG---UGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 42605 0.66 0.79054
Target:  5'- gGCGGagacGCUGCgGAGCACCUGGGGu-- -3'
miRNA:   3'- -CGUCc---CGGCGgUUCGUGGAUUCUggg -5'
27170 5' -57.2 NC_005832.1 + 90111 0.66 0.789612
Target:  5'- uGCuGGGCUGCUuugcgguaaagauGAGCACCc-AGACaCUg -3'
miRNA:   3'- -CGuCCCGGCGG-------------UUCGUGGauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 29421 0.66 0.781195
Target:  5'- aGCAGua-CGCacgaGAGCGCC-GGGACCCu -3'
miRNA:   3'- -CGUCccgGCGg---UUCGUGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 36925 0.66 0.781195
Target:  5'- gGUAGGaGCCGCgAA-CGagUAGGGCCCg -3'
miRNA:   3'- -CGUCC-CGGCGgUUcGUggAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 10013 0.66 0.781195
Target:  5'- cGCGGaGGCCGUgGcuCACgUGAGGCUg -3'
miRNA:   3'- -CGUC-CCGGCGgUucGUGgAUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 42611 0.66 0.781195
Target:  5'- ---cGGCCuGCUucGCGCCUucGGCCUg -3'
miRNA:   3'- cgucCCGG-CGGuuCGUGGAuuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 55653 0.66 0.781195
Target:  5'- cGCAuGGaCCGCCGuGUcguCCUuauAGGCCCa -3'
miRNA:   3'- -CGUcCC-GGCGGUuCGu--GGAu--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 9340 0.66 0.781195
Target:  5'- cUAGGGuguccucguCCGCCGGGUuccACCUAcGGCCg -3'
miRNA:   3'- cGUCCC---------GGCGGUUCG---UGGAUuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 103983 0.66 0.780253
Target:  5'- -gAGGGCCGCCGcggacgccgugggGGUagacaacaugGCCUGu-GCCCa -3'
miRNA:   3'- cgUCCCGGCGGU-------------UCG----------UGGAUucUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.